Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5646 | 5' | -51.9 | NC_001806.1 | + | 2502 | 0.68 | 0.962792 |
Target: 5'- ----cCG-CCGCACGcggCCUGgGCGGc -3' miRNA: 3'- aaaaaGCaGGUGUGCua-GGACgCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 57794 | 0.66 | 0.989524 |
Target: 5'- ---gUCGUCCuccguguccagggggACugGAUCUgcggGCGgGGg -3' miRNA: 3'- aaaaAGCAGG---------------UGugCUAGGa---CGCgCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 139601 | 0.66 | 0.985828 |
Target: 5'- ---aUCGgcUCUGCGCGAUCCgaaCGUGGu -3' miRNA: 3'- aaaaAGC--AGGUGUGCUAGGac-GCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 133784 | 0.66 | 0.985828 |
Target: 5'- -------cCUGCGCGAaaUCCUGCGCGa -3' miRNA: 3'- aaaaagcaGGUGUGCU--AGGACGCGCc -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 30207 | 0.67 | 0.979895 |
Target: 5'- ---gUCGggacCCGCGCGccCCcGCGCGGc -3' miRNA: 3'- aaaaAGCa---GGUGUGCuaGGaCGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 16737 | 0.67 | 0.977556 |
Target: 5'- ---aUCGUCCGCGgcAUCC-GCGCuGGg -3' miRNA: 3'- aaaaAGCAGGUGUgcUAGGaCGCG-CC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 5271 | 0.67 | 0.975022 |
Target: 5'- ----cCGUCgACGCGGaaCUaGCGCGGa -3' miRNA: 3'- aaaaaGCAGgUGUGCUagGA-CGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 5394 | 0.67 | 0.972286 |
Target: 5'- ----cUGUCuCugGCGGUCCcGCGuCGGg -3' miRNA: 3'- aaaaaGCAG-GugUGCUAGGaCGC-GCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 3454 | 0.67 | 0.972286 |
Target: 5'- ---cUCGacggCCACGCGGccggCCUggGCGCGGc -3' miRNA: 3'- aaaaAGCa---GGUGUGCUa---GGA--CGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 112124 | 0.67 | 0.969341 |
Target: 5'- ----aCGUCCAgGCcGUCCUcggggcguuugaGCGCGGc -3' miRNA: 3'- aaaaaGCAGGUgUGcUAGGA------------CGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 125682 | 0.67 | 0.969341 |
Target: 5'- ----aCGUUCGaGCGccaCCUGCGCGGg -3' miRNA: 3'- aaaaaGCAGGUgUGCua-GGACGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 85352 | 1.09 | 0.007042 |
Target: 5'- uUUUUUCGUCCACACGAUCCUGCGCGGa -3' miRNA: 3'- -AAAAAGCAGGUGUGCUAGGACGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 56616 | 0.68 | 0.946909 |
Target: 5'- gUUUUCGggCCGCGCGAcCCUG-GCcGGu -3' miRNA: 3'- aAAAAGCa-GGUGUGCUaGGACgCG-CC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 94585 | 0.69 | 0.9271 |
Target: 5'- ----cCGUCC-CACc--CCUGCGCGGu -3' miRNA: 3'- aaaaaGCAGGuGUGcuaGGACGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 123237 | 0.69 | 0.921518 |
Target: 5'- ----cCGcCCACGCGGcCCUGCGCc- -3' miRNA: 3'- aaaaaGCaGGUGUGCUaGGACGCGcc -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 67280 | 0.69 | 0.921518 |
Target: 5'- ----gCGUCCcaGCACGAUCC-GCGuUGGg -3' miRNA: 3'- aaaaaGCAGG--UGUGCUAGGaCGC-GCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 119464 | 0.7 | 0.909602 |
Target: 5'- ----cCG-CCACcCGGUCCgaGCGCGGa -3' miRNA: 3'- aaaaaGCaGGUGuGCUAGGa-CGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 23003 | 0.7 | 0.905832 |
Target: 5'- --gUUCGUgCGCgacgcgcuggugcucAUGcgCCUGCGCGGg -3' miRNA: 3'- aaaAAGCAgGUG---------------UGCuaGGACGCGCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 74867 | 0.72 | 0.835711 |
Target: 5'- ----cCGUCCugGCGAcCCUGCG-GGc -3' miRNA: 3'- aaaaaGCAGGugUGCUaGGACGCgCC- -5' |
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5646 | 5' | -51.9 | NC_001806.1 | + | 5349 | 0.73 | 0.781629 |
Target: 5'- --cUUCGUCCGCGuauCGGcgUCCcgGCGCGGc -3' miRNA: 3'- aaaAAGCAGGUGU---GCU--AGGa-CGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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