miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 3' -57.2 NC_001806.1 + 84000 1.1 0.001972
Target:  5'- gAGGAGUCGCCGGAUACGUGGGCGUACg -3'
miRNA:   3'- -UCCUCAGCGGCCUAUGCACCCGCAUG- -5'
5647 3' -57.2 NC_001806.1 + 33985 0.84 0.103287
Target:  5'- cGGGGGUCGCCGGGgcaggggcggggGCGUGGGCGg-- -3'
miRNA:   3'- -UCCUCAGCGGCCUa-----------UGCACCCGCaug -5'
5647 3' -57.2 NC_001806.1 + 28598 0.78 0.267908
Target:  5'- cGGGGUCGCCGuGUugG-GGGCGUGg -3'
miRNA:   3'- uCCUCAGCGGCcUAugCaCCCGCAUg -5'
5647 3' -57.2 NC_001806.1 + 20995 0.73 0.490216
Target:  5'- cGGGGGUCGUCGGGgucCGUGGGUc--- -3'
miRNA:   3'- -UCCUCAGCGGCCUau-GCACCCGcaug -5'
5647 3' -57.2 NC_001806.1 + 59155 0.73 0.50928
Target:  5'- cGGGGUC-UCGGGUGCGggacgcggaggGGGCGUAUg -3'
miRNA:   3'- uCCUCAGcGGCCUAUGCa----------CCCGCAUG- -5'
5647 3' -57.2 NC_001806.1 + 4750 0.71 0.60833
Target:  5'- gGGGcccGGUCGCCGGcgGCGUcGGC-UGCg -3'
miRNA:   3'- -UCC---UCAGCGGCCuaUGCAcCCGcAUG- -5'
5647 3' -57.2 NC_001806.1 + 9192 0.7 0.628556
Target:  5'- cGGGGGUCGCgGGugugGCGaGGGCGc-- -3'
miRNA:   3'- -UCCUCAGCGgCCua--UGCaCCCGCaug -5'
5647 3' -57.2 NC_001806.1 + 101760 0.7 0.658897
Target:  5'- uGGA-UCGCCaGGGcguCGUGGGCGUGg -3'
miRNA:   3'- uCCUcAGCGG-CCUau-GCACCCGCAUg -5'
5647 3' -57.2 NC_001806.1 + 150478 0.7 0.668979
Target:  5'- cGGGAaUUGCCGGAaGCGggaaGGGCGgcCg -3'
miRNA:   3'- -UCCUcAGCGGCCUaUGCa---CCCGCauG- -5'
5647 3' -57.2 NC_001806.1 + 151100 0.7 0.679032
Target:  5'- cGGGGGUCGCgGGGgucGCGggGGGCuccgGCg -3'
miRNA:   3'- -UCCUCAGCGgCCUa--UGCa-CCCGca--UG- -5'
5647 3' -57.2 NC_001806.1 + 27828 0.68 0.757367
Target:  5'- uGGGGG-CGCCGGGUugGUccccgGGGaCGggGCc -3'
miRNA:   3'- -UCCUCaGCGGCCUAugCA-----CCC-GCa-UG- -5'
5647 3' -57.2 NC_001806.1 + 11320 0.68 0.757367
Target:  5'- uGGGuGUCGUgGGGUccACGggGGGCGUc- -3'
miRNA:   3'- -UCCuCAGCGgCCUA--UGCa-CCCGCAug -5'
5647 3' -57.2 NC_001806.1 + 95389 0.67 0.803101
Target:  5'- uGGGAGcUC-CCGGggGCGgGGGCGaggACg -3'
miRNA:   3'- -UCCUC-AGcGGCCuaUGCaCCCGCa--UG- -5'
5647 3' -57.2 NC_001806.1 + 31697 0.67 0.803101
Target:  5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3'
miRNA:   3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5'
5647 3' -57.2 NC_001806.1 + 31665 0.67 0.803101
Target:  5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3'
miRNA:   3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5'
5647 3' -57.2 NC_001806.1 + 31633 0.67 0.803101
Target:  5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3'
miRNA:   3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5'
5647 3' -57.2 NC_001806.1 + 31601 0.67 0.803101
Target:  5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3'
miRNA:   3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5'
5647 3' -57.2 NC_001806.1 + 124806 0.66 0.844265
Target:  5'- uGGAGUUGgUGGuuagcguGUACGUcgccccgagccuGGGCGUACc -3'
miRNA:   3'- uCCUCAGCgGCC-------UAUGCA------------CCCGCAUG- -5'
5647 3' -57.2 NC_001806.1 + 146781 0.66 0.852914
Target:  5'- cGGGGGcCGUCGGGUACucgggGGGCa--- -3'
miRNA:   3'- -UCCUCaGCGGCCUAUGca---CCCGcaug -5'
5647 3' -57.2 NC_001806.1 + 20713 0.66 0.860572
Target:  5'- cGGGGUgggccCGCCGGGgggGCGggGGGCcgGCg -3'
miRNA:   3'- uCCUCA-----GCGGCCUa--UGCa-CCCGcaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.