Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5647 | 3' | -57.2 | NC_001806.1 | + | 84000 | 1.1 | 0.001972 |
Target: 5'- gAGGAGUCGCCGGAUACGUGGGCGUACg -3' miRNA: 3'- -UCCUCAGCGGCCUAUGCACCCGCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 33985 | 0.84 | 0.103287 |
Target: 5'- cGGGGGUCGCCGGGgcaggggcggggGCGUGGGCGg-- -3' miRNA: 3'- -UCCUCAGCGGCCUa-----------UGCACCCGCaug -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 28598 | 0.78 | 0.267908 |
Target: 5'- cGGGGUCGCCGuGUugG-GGGCGUGg -3' miRNA: 3'- uCCUCAGCGGCcUAugCaCCCGCAUg -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 20995 | 0.73 | 0.490216 |
Target: 5'- cGGGGGUCGUCGGGgucCGUGGGUc--- -3' miRNA: 3'- -UCCUCAGCGGCCUau-GCACCCGcaug -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 59155 | 0.73 | 0.50928 |
Target: 5'- cGGGGUC-UCGGGUGCGggacgcggaggGGGCGUAUg -3' miRNA: 3'- uCCUCAGcGGCCUAUGCa----------CCCGCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 4750 | 0.71 | 0.60833 |
Target: 5'- gGGGcccGGUCGCCGGcgGCGUcGGC-UGCg -3' miRNA: 3'- -UCC---UCAGCGGCCuaUGCAcCCGcAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 9192 | 0.7 | 0.628556 |
Target: 5'- cGGGGGUCGCgGGugugGCGaGGGCGc-- -3' miRNA: 3'- -UCCUCAGCGgCCua--UGCaCCCGCaug -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 101760 | 0.7 | 0.658897 |
Target: 5'- uGGA-UCGCCaGGGcguCGUGGGCGUGg -3' miRNA: 3'- uCCUcAGCGG-CCUau-GCACCCGCAUg -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 150478 | 0.7 | 0.668979 |
Target: 5'- cGGGAaUUGCCGGAaGCGggaaGGGCGgcCg -3' miRNA: 3'- -UCCUcAGCGGCCUaUGCa---CCCGCauG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 151100 | 0.7 | 0.679032 |
Target: 5'- cGGGGGUCGCgGGGgucGCGggGGGCuccgGCg -3' miRNA: 3'- -UCCUCAGCGgCCUa--UGCa-CCCGca--UG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 27828 | 0.68 | 0.757367 |
Target: 5'- uGGGGG-CGCCGGGUugGUccccgGGGaCGggGCc -3' miRNA: 3'- -UCCUCaGCGGCCUAugCA-----CCC-GCa-UG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 11320 | 0.68 | 0.757367 |
Target: 5'- uGGGuGUCGUgGGGUccACGggGGGCGUc- -3' miRNA: 3'- -UCCuCAGCGgCCUA--UGCa-CCCGCAug -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 95389 | 0.67 | 0.803101 |
Target: 5'- uGGGAGcUC-CCGGggGCGgGGGCGaggACg -3' miRNA: 3'- -UCCUC-AGcGGCCuaUGCaCCCGCa--UG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 31697 | 0.67 | 0.803101 |
Target: 5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3' miRNA: 3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 31665 | 0.67 | 0.803101 |
Target: 5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3' miRNA: 3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 31633 | 0.67 | 0.803101 |
Target: 5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3' miRNA: 3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 31601 | 0.67 | 0.803101 |
Target: 5'- uGGGGGUgCGUgGGA---GUGGGgGUGCg -3' miRNA: 3'- -UCCUCA-GCGgCCUaugCACCCgCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 124806 | 0.66 | 0.844265 |
Target: 5'- uGGAGUUGgUGGuuagcguGUACGUcgccccgagccuGGGCGUACc -3' miRNA: 3'- uCCUCAGCgGCC-------UAUGCA------------CCCGCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 146781 | 0.66 | 0.852914 |
Target: 5'- cGGGGGcCGUCGGGUACucgggGGGCa--- -3' miRNA: 3'- -UCCUCaGCGGCCUAUGca---CCCGcaug -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 20713 | 0.66 | 0.860572 |
Target: 5'- cGGGGUgggccCGCCGGGgggGCGggGGGCcgGCg -3' miRNA: 3'- uCCUCA-----GCGGCCUa--UGCa-CCCGcaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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