miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 106770 0.73 0.282083
Target:  5'- ----gGCUCCgCGCUGGaCGCCUCCGCc -3'
miRNA:   3'- gacaaCGAGGaGCGGCC-GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 57882 0.74 0.263466
Target:  5'- ----cGCcaUCCUCGCCccccgaGCGCCCCCGCu -3'
miRNA:   3'- gacaaCG--AGGAGCGGc-----CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 85702 0.75 0.223916
Target:  5'- -aGUUucCUCCgccguagCGCCGGCACCCaCCGCc -3'
miRNA:   3'- gaCAAc-GAGGa------GCGGCCGUGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 33913 0.75 0.218696
Target:  5'- -gGUUGUUCCUCGCCuccccCACaCCCCGCc -3'
miRNA:   3'- gaCAACGAGGAGCGGcc---GUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 4929 0.76 0.203658
Target:  5'- ----gGCgUCCUCGCCGGCgucgguGCCCgCCGCg -3'
miRNA:   3'- gacaaCG-AGGAGCGGCCG------UGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 21421 0.71 0.407052
Target:  5'- ----cGCggCCUCGCCGccccGgACCCCCGCc -3'
miRNA:   3'- gacaaCGa-GGAGCGGC----CgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22055 0.71 0.407052
Target:  5'- -cGUgGC-CCggCGCCGG-GCCCCCGCc -3'
miRNA:   3'- gaCAaCGaGGa-GCGGCCgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 726 0.69 0.523114
Target:  5'- ----aGC-CCUCcCCGGCGCgUCCCGCg -3'
miRNA:   3'- gacaaCGaGGAGcGGCCGUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 129646 0.69 0.504325
Target:  5'- ----aGCUCCU-GCaGGCugCCCUGCg -3'
miRNA:   3'- gacaaCGAGGAgCGgCCGugGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 104438 0.69 0.475801
Target:  5'- -cGUUGCgcCCUCGCCGGCaacaaaaaGCCacggaagUCCGCc -3'
miRNA:   3'- gaCAACGa-GGAGCGGCCG--------UGG-------GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 78905 0.7 0.467671
Target:  5'- cCUGUccgcGCUCaUCGCCGaGCgGCCCCuCGCc -3'
miRNA:   3'- -GACAa---CGAGgAGCGGC-CG-UGGGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 114339 0.7 0.467671
Target:  5'- -cGcUGCUCugCUCGgCGGCGCCCgaCGCg -3'
miRNA:   3'- gaCaACGAG--GAGCgGCCGUGGGg-GCG- -5'
5647 5' -61.4 NC_001806.1 + 72128 0.7 0.467671
Target:  5'- ----cGUUCUUCGCCGGCccgugGgCCCUGCg -3'
miRNA:   3'- gacaaCGAGGAGCGGCCG-----UgGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 46101 0.7 0.458721
Target:  5'- uUGUccgGCccggggCCUgCGCgGGCGCCUCCGCc -3'
miRNA:   3'- gACAa--CGa-----GGA-GCGgCCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 132447 0.7 0.458721
Target:  5'- -aGUU-CUCCgCGCCGGCGCUCgUCGCc -3'
miRNA:   3'- gaCAAcGAGGaGCGGCCGUGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 98712 0.7 0.458721
Target:  5'- uCUGUUGgUCCUgGCCGGCcuggcggcgGCCUucuUCGCc -3'
miRNA:   3'- -GACAACgAGGAgCGGCCG---------UGGG---GGCG- -5'
5647 5' -61.4 NC_001806.1 + 30166 0.7 0.458721
Target:  5'- ----gGCUCCgcccccCGCCccgGGC-CCCCCGCg -3'
miRNA:   3'- gacaaCGAGGa-----GCGG---CCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 21577 0.7 0.449864
Target:  5'- cCUGUcGCcgcgCC-CGCCGGCccaGCCgCCGCg -3'
miRNA:   3'- -GACAaCGa---GGaGCGGCCG---UGGgGGCG- -5'
5647 5' -61.4 NC_001806.1 + 140010 0.7 0.432437
Target:  5'- cCUGggucaGCUCCUCGCgCGGCgaaaGCgCCCGg -3'
miRNA:   3'- -GACaa---CGAGGAGCG-GCCG----UGgGGGCg -5'
5647 5' -61.4 NC_001806.1 + 24151 0.7 0.432437
Target:  5'- uCUGggGCUgCUCGCCaGCGCCggcgaCCgGCg -3'
miRNA:   3'- -GACaaCGAgGAGCGGcCGUGG-----GGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.