miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 92926 0.66 0.69866
Target:  5'- -cGggGCgggCCUggagGCCGGgGCCCgCGCg -3'
miRNA:   3'- gaCaaCGa--GGAg---CGGCCgUGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 3666 0.71 0.374699
Target:  5'- ---cUGCgCCggCGCCGGgGCuCCCCGCg -3'
miRNA:   3'- gacaACGaGGa-GCGGCCgUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 96360 0.71 0.390657
Target:  5'- -cGUaGUcCCgccaugCGCCagGGCGCCCCCGCg -3'
miRNA:   3'- gaCAaCGaGGa-----GCGG--CCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 21421 0.71 0.407052
Target:  5'- ----cGCggCCUCGCCGccccGgACCCCCGCc -3'
miRNA:   3'- gacaaCGa-GGAGCGGC----CgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22055 0.71 0.407052
Target:  5'- -cGUgGC-CCggCGCCGG-GCCCCCGCc -3'
miRNA:   3'- gaCAaCGaGGa-GCGGCCgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 24151 0.7 0.432437
Target:  5'- uCUGggGCUgCUCGCCaGCGCCggcgaCCgGCg -3'
miRNA:   3'- -GACaaCGAgGAGCGGcCGUGG-----GGgCG- -5'
5647 5' -61.4 NC_001806.1 + 140010 0.7 0.432437
Target:  5'- cCUGggucaGCUCCUCGCgCGGCgaaaGCgCCCGg -3'
miRNA:   3'- -GACaa---CGAGGAGCG-GCCG----UGgGGGCg -5'
5647 5' -61.4 NC_001806.1 + 21577 0.7 0.449864
Target:  5'- cCUGUcGCcgcgCC-CGCCGGCccaGCCgCCGCg -3'
miRNA:   3'- -GACAaCGa---GGaGCGGCCG---UGGgGGCG- -5'
5647 5' -61.4 NC_001806.1 + 30166 0.7 0.458721
Target:  5'- ----gGCUCCgcccccCGCCccgGGC-CCCCCGCg -3'
miRNA:   3'- gacaaCGAGGa-----GCGG---CCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 115411 0.71 0.366887
Target:  5'- ----gGggCCUCGCCGGUgcucaGCCCCUGCu -3'
miRNA:   3'- gacaaCgaGGAGCGGCCG-----UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 24802 0.72 0.344132
Target:  5'- -gGggGC-CCUgcCGCCGGCGCCgCCCGg -3'
miRNA:   3'- gaCaaCGaGGA--GCGGCCGUGG-GGGCg -5'
5647 5' -61.4 NC_001806.1 + 73081 0.72 0.336775
Target:  5'- -cGgaGCcugUCCUCGCCucGGCACCCCC-Cg -3'
miRNA:   3'- gaCaaCG---AGGAGCGG--CCGUGGGGGcG- -5'
5647 5' -61.4 NC_001806.1 + 4929 0.76 0.203658
Target:  5'- ----gGCgUCCUCGCCGGCgucgguGCCCgCCGCg -3'
miRNA:   3'- gacaaCG-AGGAGCGGCCG------UGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 33913 0.75 0.218696
Target:  5'- -gGUUGUUCCUCGCCuccccCACaCCCCGCc -3'
miRNA:   3'- gaCAACGAGGAGCGGcc---GUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 85702 0.75 0.223916
Target:  5'- -aGUUucCUCCgccguagCGCCGGCACCCaCCGCc -3'
miRNA:   3'- gaCAAc-GAGGa------GCGGCCGUGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 57882 0.74 0.263466
Target:  5'- ----cGCcaUCCUCGCCccccgaGCGCCCCCGCu -3'
miRNA:   3'- gacaaCG--AGGAGCGGc-----CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 106770 0.73 0.282083
Target:  5'- ----gGCUCCgCGCUGGaCGCCUCCGCc -3'
miRNA:   3'- gacaaCGAGGaGCGGCC-GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 26523 0.72 0.329534
Target:  5'- ----cGCcCCcCGCCGGUggGCCCCCGCc -3'
miRNA:   3'- gacaaCGaGGaGCGGCCG--UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 63712 0.72 0.336775
Target:  5'- gCUGggcCUCUUCGCCGGCgaggACCCCCu- -3'
miRNA:   3'- -GACaacGAGGAGCGGCCG----UGGGGGcg -5'
5647 5' -61.4 NC_001806.1 + 148754 0.72 0.336775
Target:  5'- -cGUcGCUCCcccCGUCcucucgagggggGGCGCCCCCGCa -3'
miRNA:   3'- gaCAaCGAGGa--GCGG------------CCGUGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.