miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 135011 0.66 0.649744
Target:  5'- ----cGC-CCUgGuCCGGCGCgCCUCGCg -3'
miRNA:   3'- gacaaCGaGGAgC-GGCCGUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 66635 0.66 0.649744
Target:  5'- ----cGCUCCaggGCCGGCuCCaaCCCGCg -3'
miRNA:   3'- gacaaCGAGGag-CGGCCGuGG--GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 50167 0.66 0.649744
Target:  5'- gUGUUccGCagCUCGCUGGggUCCCUGCu -3'
miRNA:   3'- gACAA--CGagGAGCGGCCguGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 87321 0.67 0.639892
Target:  5'- ----gGCUCC-CGCU--CGCCCCCGCc -3'
miRNA:   3'- gacaaCGAGGaGCGGccGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 148340 0.67 0.639892
Target:  5'- ----gGgUCCUUGCC-GC-CCCCCGCc -3'
miRNA:   3'- gacaaCgAGGAGCGGcCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 74320 0.67 0.63792
Target:  5'- cCUGUUGCgggaucugaUCCagcggggccagaCGCUGGaCGCCCCCGa -3'
miRNA:   3'- -GACAACG---------AGGa-----------GCGGCC-GUGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 16719 0.67 0.620177
Target:  5'- -cGggGCgUCCUCGUcgacaucguccgCGGCAUCCgCGCu -3'
miRNA:   3'- gaCaaCG-AGGAGCG------------GCCGUGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 62368 0.67 0.620177
Target:  5'- aUGUUG-UCgUCGCCGcCAaagaCCCCGCu -3'
miRNA:   3'- gACAACgAGgAGCGGCcGUg---GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 5504 0.67 0.620177
Target:  5'- -aGgaGCagCggaggcCGCCGGC-CCCCCGCc -3'
miRNA:   3'- gaCaaCGagGa-----GCGGCCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22893 0.67 0.600496
Target:  5'- -cGggGCccggCC-CGCCaGC-CCCCCGCg -3'
miRNA:   3'- gaCaaCGa---GGaGCGGcCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 34685 0.67 0.600496
Target:  5'- -------aCCUC-CCGcGCACCCCCGCc -3'
miRNA:   3'- gacaacgaGGAGcGGC-CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 116911 0.67 0.590684
Target:  5'- -aGgcGCUCgUCGCCuGGCugaCCCaCGCg -3'
miRNA:   3'- gaCaaCGAGgAGCGG-CCGug-GGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 52008 0.67 0.590684
Target:  5'- -aGUccCUCCaaUCGCCGGUuCCuCCCGCu -3'
miRNA:   3'- gaCAacGAGG--AGCGGCCGuGG-GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 38688 0.67 0.589704
Target:  5'- -----cCUCCUCGUuccgccccccgggCGGgGCCCCCGCc -3'
miRNA:   3'- gacaacGAGGAGCG-------------GCCgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 80693 0.68 0.580901
Target:  5'- uCUGggGUgUCUUCGUgGGCAuccuCCCUCGCg -3'
miRNA:   3'- -GACaaCG-AGGAGCGgCCGU----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 30710 0.68 0.580901
Target:  5'- ---cUGCcucuUCCUCcUCGGCcccgACCCCCGCg -3'
miRNA:   3'- gacaACG----AGGAGcGGCCG----UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 129844 0.68 0.580901
Target:  5'- gCUGUUGCUUcaCUCGCU--CACCCCCc- -3'
miRNA:   3'- -GACAACGAG--GAGCGGccGUGGGGGcg -5'
5647 5' -61.4 NC_001806.1 + 77395 0.68 0.571151
Target:  5'- -cGcgGCggCCgCGCCcGCGCCCCUGCu -3'
miRNA:   3'- gaCaaCGa-GGaGCGGcCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 140678 0.68 0.571151
Target:  5'- uUGUUGCUgcgcggcgcCCgcgugccgCGCUGGaaCGCCCCCGUc -3'
miRNA:   3'- gACAACGA---------GGa-------GCGGCC--GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 52707 0.68 0.571151
Target:  5'- -cGgagGUUCCggaggCGCCGcGCggacggcgcgggGCCCCCGCu -3'
miRNA:   3'- gaCaa-CGAGGa----GCGGC-CG------------UGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.