miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 5' -49.7 NC_001806.1 + 50525 0.66 0.997042
Target:  5'- aCGAGGcgcugggcgacaccGCAGcGCgCCGGCUGCUCGc -3'
miRNA:   3'- gGUUCCa-------------CGUCaUGaGGUUGAUGAGC- -5'
5648 5' -49.7 NC_001806.1 + 151292 0.66 0.997329
Target:  5'- gCCGGGGggcggcgGCGGUGggccgggcCUCUGGCgccgGCUCGg -3'
miRNA:   3'- -GGUUCCa------CGUCAU--------GAGGUUGa---UGAGC- -5'
5648 5' -49.7 NC_001806.1 + 124576 0.66 0.998124
Target:  5'- cCCGGGG-GCAGUuuugcCUCCAGgaGC-CGg -3'
miRNA:   3'- -GGUUCCaCGUCAu----GAGGUUgaUGaGC- -5'
5648 5' -49.7 NC_001806.1 + 92809 0.67 0.995629
Target:  5'- aCCAGaucUGCGGUACUgCGAUcACUCGa -3'
miRNA:   3'- -GGUUcc-ACGUCAUGAgGUUGaUGAGC- -5'
5648 5' -49.7 NC_001806.1 + 17611 0.69 0.984627
Target:  5'- aCCGAGGUcguggacgccgugGC-GUGCuUCCGACUGCUg- -3'
miRNA:   3'- -GGUUCCA-------------CGuCAUG-AGGUUGAUGAgc -5'
5648 5' -49.7 NC_001806.1 + 134534 0.69 0.984812
Target:  5'- uUCGGGG-GCAGUuCUCCAGgUACaUCa -3'
miRNA:   3'- -GGUUCCaCGUCAuGAGGUUgAUG-AGc -5'
5648 5' -49.7 NC_001806.1 + 146835 0.75 0.818706
Target:  5'- gCAGGGUGCGGcgGCUCCAGCcggggACcgCGg -3'
miRNA:   3'- gGUUCCACGUCa-UGAGGUUGa----UGa-GC- -5'
5648 5' -49.7 NC_001806.1 + 109704 0.76 0.752056
Target:  5'- gCGAGGUGCAGUACUCggccaGAC-AUUCGu -3'
miRNA:   3'- gGUUCCACGUCAUGAGg----UUGaUGAGC- -5'
5648 5' -49.7 NC_001806.1 + 74198 0.76 0.771823
Target:  5'- gCCGucGUGCccGUGgUCCAGCUGCUCGa -3'
miRNA:   3'- -GGUucCACGu-CAUgAGGUUGAUGAGC- -5'
5648 5' -49.7 NC_001806.1 + 83731 1.11 0.008781
Target:  5'- gCCAAGGUGCAGUACUCCAACUACUCGu -3'
miRNA:   3'- -GGUUCCACGUCAUGAGGUUGAUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.