miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 66990 0.68 0.830838
Target:  5'- aCGAuCCAGGCGcGCCcccacccGCGUCccGCGg -3'
miRNA:   3'- aGCUuGGUCUGC-CGG-------CGCAGuaCGCg -5'
5649 3' -56.6 NC_001806.1 + 67044 0.7 0.692715
Target:  5'- cCGuACCGcauCGGCgGCGUCGcGCGCg -3'
miRNA:   3'- aGCuUGGUcu-GCCGgCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 68580 0.68 0.796475
Target:  5'- gCGcACCGcGGCGGCCcuggggccgguccGCGUCcgccaGUGCGCc -3'
miRNA:   3'- aGCuUGGU-CUGCCGG-------------CGCAG-----UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 69080 0.69 0.77931
Target:  5'- gUCGAcgGCCcu-CaGCCGCGUCAgcccGCGCu -3'
miRNA:   3'- -AGCU--UGGucuGcCGGCGCAGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 70406 0.66 0.891368
Target:  5'- aUCGuGCUgcuGCGGCUGCa-CAUGCGCa -3'
miRNA:   3'- -AGCuUGGuc-UGCCGGCGcaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 70965 0.68 0.80966
Target:  5'- cUCGGccgACCAGcgcgccGCGGCCauccgagagguaaugGCG-CAUGCGCc -3'
miRNA:   3'- -AGCU---UGGUC------UGCCGG---------------CGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 71354 0.73 0.532456
Target:  5'- aCGGcccacGCCAGGCGGaCCGCGagGggGCGCc -3'
miRNA:   3'- aGCU-----UGGUCUGCC-GGCGCagUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 71818 0.68 0.831662
Target:  5'- -gGAGCCGGGgggguCGGUauCGUG-CAUGCGCu -3'
miRNA:   3'- agCUUGGUCU-----GCCG--GCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 71959 0.71 0.63236
Target:  5'- gCGGGCCcuGGGCcGCCGCG-CAUGUGUu -3'
miRNA:   3'- aGCUUGG--UCUGcCGGCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 72397 0.71 0.662646
Target:  5'- gCGGACUuGACGGCCGCGgcucUGCa- -3'
miRNA:   3'- aGCUUGGuCUGCCGGCGCagu-ACGcg -5'
5649 3' -56.6 NC_001806.1 + 74169 0.69 0.747474
Target:  5'- aCGAccGCCGGuuucacguggcuuCGGCCGcCGUCGUGCcCg -3'
miRNA:   3'- aGCU--UGGUCu------------GCCGGC-GCAGUACGcG- -5'
5649 3' -56.6 NC_001806.1 + 74537 0.67 0.86611
Target:  5'- cUGGGCCAGcagcuggacagcgacGCGGCCuuuguuccuGCGcCcgGCGCg -3'
miRNA:   3'- aGCUUGGUC---------------UGCCGG---------CGCaGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 76241 0.66 0.884632
Target:  5'- cCGGGCCGacgcGCGGCgCGCGaUCGgaagcgugGCGCu -3'
miRNA:   3'- aGCUUGGUc---UGCCG-GCGC-AGUa-------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 77131 0.66 0.909634
Target:  5'- gCGGGCCGG--GGCCGUGgaggagcUCGggggGCGCg -3'
miRNA:   3'- aGCUUGGUCugCCGGCGC-------AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 77375 0.73 0.532456
Target:  5'- aCaGGCCAGACGGgCGCGg---GCGCg -3'
miRNA:   3'- aGcUUGGUCUGCCgGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 78785 0.72 0.581975
Target:  5'- gCGGGCCGGAC-GCCGCcu--UGCGCg -3'
miRNA:   3'- aGCUUGGUCUGcCGGCGcaguACGCG- -5'
5649 3' -56.6 NC_001806.1 + 81349 0.76 0.371014
Target:  5'- cCGcAACCAGGCGGCCgggGCGUCGccCGCg -3'
miRNA:   3'- aGC-UUGGUCUGCCGG---CGCAGUacGCG- -5'
5649 3' -56.6 NC_001806.1 + 81412 0.7 0.692715
Target:  5'- gUGGGCCAGACcaaGGUC-CGUCA-GCGCc -3'
miRNA:   3'- aGCUUGGUCUG---CCGGcGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 82728 0.74 0.484531
Target:  5'- cCGGggucuGCgGGGCGGCgGCGUCGUcggGCGCu -3'
miRNA:   3'- aGCU-----UGgUCUGCCGgCGCAGUA---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 82875 1.12 0.001659
Target:  5'- cUCGAACCAGACGGCCGCGUCAUGCGCg -3'
miRNA:   3'- -AGCUUGGUCUGCCGGCGCAGUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.