Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 52573 | 0.66 | 0.897881 |
Target: 5'- aCGAcaugGCCAG-CGGCC-CGggggggCAUcGCGCg -3' miRNA: 3'- aGCU----UGGUCuGCCGGcGCa-----GUA-CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 30297 | 0.66 | 0.877679 |
Target: 5'- -gGAGCCGGccgcccgccccGCGGaCgCGCGcCGUGUGCc -3' miRNA: 3'- agCUUGGUC-----------UGCC-G-GCGCaGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 2742 | 0.66 | 0.891368 |
Target: 5'- gCGGGCCGGcgcgacACGGCCaCGgg--GCGCg -3' miRNA: 3'- aGCUUGGUC------UGCCGGcGCaguaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 22202 | 0.66 | 0.904169 |
Target: 5'- cCGAGCUGGGCGacGCCGCGcagCAguaCGCc -3' miRNA: 3'- aGCUUGGUCUGC--CGGCGCa--GUac-GCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 96990 | 0.66 | 0.884632 |
Target: 5'- gUCGGuCC--ACGGCCaaGUaCGUGCGCa -3' miRNA: 3'- -AGCUuGGucUGCCGGcgCA-GUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 19884 | 0.66 | 0.890704 |
Target: 5'- gCGGACCGGugGGUuucUGuCGUCggaggcccccgggGUGCGUc -3' miRNA: 3'- aGCUUGGUCugCCG---GC-GCAG-------------UACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 70406 | 0.66 | 0.891368 |
Target: 5'- aUCGuGCUgcuGCGGCUGCa-CAUGCGCa -3' miRNA: 3'- -AGCuUGGuc-UGCCGGCGcaGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 30219 | 0.66 | 0.877679 |
Target: 5'- nCGcccCCGcGCGGCCGUGgcccCGUGCGUg -3' miRNA: 3'- aGCuu-GGUcUGCCGGCGCa---GUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 2661 | 0.66 | 0.891368 |
Target: 5'- -aGGGC--GGCGGCCGCGg---GCGCc -3' miRNA: 3'- agCUUGguCUGCCGGCGCaguaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 24371 | 0.66 | 0.897881 |
Target: 5'- gCGcGCguGGaGGCCGCG-CAcGCGCg -3' miRNA: 3'- aGCuUGguCUgCCGGCGCaGUaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 3830 | 0.66 | 0.904169 |
Target: 5'- cCGAAgCGGcCGGCCGC--CAUGgCGUa -3' miRNA: 3'- aGCUUgGUCuGCCGGCGcaGUAC-GCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 151289 | 0.66 | 0.884632 |
Target: 5'- -gGGGCCGGGgGGCgGCGgcgGUGgGCc -3' miRNA: 3'- agCUUGGUCUgCCGgCGCag-UACgCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 121406 | 0.66 | 0.897881 |
Target: 5'- -gGAGCCGGGCGcguGCUGCGcCuUGgGCc -3' miRNA: 3'- agCUUGGUCUGC---CGGCGCaGuACgCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 50098 | 0.66 | 0.897881 |
Target: 5'- -gGGGCC--GCGGCCGUGcCGUuacugaGCGCg -3' miRNA: 3'- agCUUGGucUGCCGGCGCaGUA------CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 76241 | 0.66 | 0.884632 |
Target: 5'- cCGGGCCGacgcGCGGCgCGCGaUCGgaagcgugGCGCu -3' miRNA: 3'- aGCUUGGUc---UGCCG-GCGC-AGUa-------CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 42956 | 0.66 | 0.897881 |
Target: 5'- uUCGAACCugucuugcuccGugGGCC-CGUCggcacggccaucGUGCGUg -3' miRNA: 3'- -AGCUUGGu----------CugCCGGcGCAG------------UACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 66826 | 0.66 | 0.91023 |
Target: 5'- cCGGcCCGGGUGGCCG-GU-GUGCGCc -3' miRNA: 3'- aGCUuGGUCUGCCGGCgCAgUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 29847 | 0.66 | 0.891368 |
Target: 5'- ----cCCAGcCGGCCGCGgcUCGgacaGCGCc -3' miRNA: 3'- agcuuGGUCuGCCGGCGC--AGUa---CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 134861 | 0.66 | 0.877679 |
Target: 5'- cUCGcaGGCCAGGCGGagcaGCGUC-UGCugGCu -3' miRNA: 3'- -AGC--UUGGUCUGCCgg--CGCAGuACG--CG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 37809 | 0.66 | 0.884632 |
Target: 5'- gCGGGCgGGGgGGCaaucgccaGCGUCAUuaGCg -3' miRNA: 3'- aGCUUGgUCUgCCGg-------CGCAGUAcgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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