miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 2212 0.77 0.325094
Target:  5'- cCGc-CCAGGCGGCCGUGUCcgGCccGCa -3'
miRNA:   3'- aGCuuGGUCUGCCGGCGCAGuaCG--CG- -5'
5649 3' -56.6 NC_001806.1 + 2661 0.66 0.891368
Target:  5'- -aGGGC--GGCGGCCGCGg---GCGCc -3'
miRNA:   3'- agCUUGguCUGCCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 2742 0.66 0.891368
Target:  5'- gCGGGCCGGcgcgacACGGCCaCGgg--GCGCg -3'
miRNA:   3'- aGCUUGGUC------UGCCGGcGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 2934 0.69 0.760741
Target:  5'- cCGccuCCGGGCGGCCGgGcCGggccgggacucuUGCGCu -3'
miRNA:   3'- aGCuu-GGUCUGCCGGCgCaGU------------ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 3005 0.74 0.47519
Target:  5'- gCGGccGCCAGcgcguCGGCgGCGUCcgGUGCGCu -3'
miRNA:   3'- aGCU--UGGUCu----GCCGgCGCAG--UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 3090 0.67 0.84778
Target:  5'- cCGcGGCgGcGGCGGCCGCGgagcUCGgcagGCGCg -3'
miRNA:   3'- aGC-UUGgU-CUGCCGGCGC----AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 3279 0.67 0.855556
Target:  5'- aCGcGCgCAGGCgGGgCGCGUCG-GCGUg -3'
miRNA:   3'- aGCuUG-GUCUG-CCgGCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 3454 0.68 0.831662
Target:  5'- cUCGAcgGCCAcGCGGCCG-GcCuggGCGCg -3'
miRNA:   3'- -AGCU--UGGUcUGCCGGCgCaGua-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 3783 0.76 0.379085
Target:  5'- aUCGGcggcucaugGCCAcGGCGGCCGcCG-CGUGCGCc -3'
miRNA:   3'- -AGCU---------UGGU-CUGCCGGC-GCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 3830 0.66 0.904169
Target:  5'- cCGAAgCGGcCGGCCGC--CAUGgCGUa -3'
miRNA:   3'- aGCUUgGUCuGCCGGCGcaGUAC-GCG- -5'
5649 3' -56.6 NC_001806.1 + 4247 0.68 0.797364
Target:  5'- -aGAaggcGCCGGA-GGUCGCGUCG-GCGUc -3'
miRNA:   3'- agCU----UGGUCUgCCGGCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 4481 0.73 0.513059
Target:  5'- aCGGACCccgcccGACGGcCCGCGccucgCGUGCGUg -3'
miRNA:   3'- aGCUUGGu-----CUGCC-GGCGCa----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 4743 0.74 0.493959
Target:  5'- cCGGGCCGGGgcccggucgcCGGCgGCGUCGgcUGCGUc -3'
miRNA:   3'- aGCUUGGUCU----------GCCGgCGCAGU--ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 6083 0.67 0.839813
Target:  5'- gCGGGcCCGGGCGGCgGgGggcgggucucUCcgGCGCa -3'
miRNA:   3'- aGCUU-GGUCUGCCGgCgC----------AGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 9014 0.66 0.91023
Target:  5'- gCGGACCAc-CGGCC-CuUUAUGCGCc -3'
miRNA:   3'- aGCUUGGUcuGCCGGcGcAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 11477 0.68 0.788406
Target:  5'- gCGGGCCA--UGGCCGCuUCGUucaccGCGCa -3'
miRNA:   3'- aGCUUGGUcuGCCGGCGcAGUA-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 18030 0.68 0.814837
Target:  5'- cCGGugCGG-CGuCCGUGUUGUGCGUg -3'
miRNA:   3'- aGCUugGUCuGCcGGCGCAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 19884 0.66 0.890704
Target:  5'- gCGGACCGGugGGUuucUGuCGUCggaggcccccgggGUGCGUc -3'
miRNA:   3'- aGCUUGGUCugCCG---GC-GCAG-------------UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 20536 0.67 0.84778
Target:  5'- cCGGAUCGGGCGGUaaugagaugccaUGCGgggCGggGCGCg -3'
miRNA:   3'- aGCUUGGUCUGCCG------------GCGCa--GUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 20658 0.68 0.823334
Target:  5'- aCGGGCCcccGGCGuGCCgGCGUCGggGCGg -3'
miRNA:   3'- aGCUUGGu--CUGC-CGG-CGCAGUa-CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.