miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 66826 0.66 0.91023
Target:  5'- cCGGcCCGGGUGGCCG-GU-GUGCGCc -3'
miRNA:   3'- aGCUuGGUCUGCCGGCgCAgUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 4743 0.74 0.493959
Target:  5'- cCGGGCCGGGgcccggucgcCGGCgGCGUCGgcUGCGUc -3'
miRNA:   3'- aGCUUGGUCU----------GCCGgCGCAGU--ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 41476 0.74 0.503469
Target:  5'- uUCG-GCCAGGCGagcgucCCGCGUUAUGCGg -3'
miRNA:   3'- -AGCuUGGUCUGCc-----GGCGCAGUACGCg -5'
5649 3' -56.6 NC_001806.1 + 4481 0.73 0.513059
Target:  5'- aCGGACCccgcccGACGGcCCGCGccucgCGUGCGUg -3'
miRNA:   3'- aGCUUGGu-----CUGCC-GGCGCa----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 133668 0.73 0.522722
Target:  5'- -aGAGCacuacuGGCGG-CGCGUCGUGCGUg -3'
miRNA:   3'- agCUUGgu----CUGCCgGCGCAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 118735 0.73 0.529529
Target:  5'- gCGAguGCCuGGCGGCCGCGggaaUCcccuggccgcccugAUGCGCg -3'
miRNA:   3'- aGCU--UGGuCUGCCGGCGC----AG--------------UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 71354 0.73 0.532456
Target:  5'- aCGGcccacGCCAGGCGGaCCGCGagGggGCGCc -3'
miRNA:   3'- aGCU-----UGGUCUGCC-GGCGCagUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 77375 0.73 0.532456
Target:  5'- aCaGGCCAGACGGgCGCGg---GCGCg -3'
miRNA:   3'- aGcUUGGUCUGCCgGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 60000 0.72 0.581975
Target:  5'- -gGGACCcgggGGACGGCCGgGUCcggagccGCGCu -3'
miRNA:   3'- agCUUGG----UCUGCCGGCgCAGua-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 102836 0.74 0.493012
Target:  5'- aCGAGCCGGucgccccGCGGcCCGCGUacacCAUGUGUa -3'
miRNA:   3'- aGCUUGGUC-------UGCC-GGCGCA----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 82728 0.74 0.484531
Target:  5'- cCGGggucuGCgGGGCGGCgGCGUCGUcggGCGCu -3'
miRNA:   3'- aGCU-----UGgUCUGCCGgCGCAGUA---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 3005 0.74 0.47519
Target:  5'- gCGGccGCCAGcgcguCGGCgGCGUCcgGUGCGCu -3'
miRNA:   3'- aGCU--UGGUCu----GCCGgCGCAG--UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 128540 0.8 0.240498
Target:  5'- cCGcAGCCAGACGGCggccCGCGUCcaggGCGCg -3'
miRNA:   3'- aGC-UUGGUCUGCCG----GCGCAGua--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 2212 0.77 0.325094
Target:  5'- cCGc-CCAGGCGGCCGUGUCcgGCccGCa -3'
miRNA:   3'- aGCuuGGUCUGCCGGCGCAGuaCG--CG- -5'
5649 3' -56.6 NC_001806.1 + 91159 0.77 0.339919
Target:  5'- uUCGAggGCCAGgacACGGCCGCGgCccGCGCc -3'
miRNA:   3'- -AGCU--UGGUC---UGCCGGCGCaGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 81349 0.76 0.371014
Target:  5'- cCGcAACCAGGCGGCCgggGCGUCGccCGCg -3'
miRNA:   3'- aGC-UUGGUCUGCCGG---CGCAGUacGCG- -5'
5649 3' -56.6 NC_001806.1 + 3783 0.76 0.379085
Target:  5'- aUCGGcggcucaugGCCAcGGCGGCCGcCG-CGUGCGCc -3'
miRNA:   3'- -AGCU---------UGGU-CUGCCGGC-GCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 151451 0.75 0.403994
Target:  5'- gCGGcgGCgGGGCGGCCGCGg---GCGCg -3'
miRNA:   3'- aGCU--UGgUCUGCCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 135576 0.75 0.412524
Target:  5'- cUCGGccGCCAGGuCGGCCGCGcgCugcugGCGCu -3'
miRNA:   3'- -AGCU--UGGUCU-GCCGGCGCa-Gua---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 30182 0.75 0.447726
Target:  5'- cCGGGCCccccgcguccGCGGCCGCGUCGggacccGCGCg -3'
miRNA:   3'- aGCUUGGuc--------UGCCGGCGCAGUa-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.