Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 66826 | 0.66 | 0.91023 |
Target: 5'- cCGGcCCGGGUGGCCG-GU-GUGCGCc -3' miRNA: 3'- aGCUuGGUCUGCCGGCgCAgUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 4743 | 0.74 | 0.493959 |
Target: 5'- cCGGGCCGGGgcccggucgcCGGCgGCGUCGgcUGCGUc -3' miRNA: 3'- aGCUUGGUCU----------GCCGgCGCAGU--ACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 41476 | 0.74 | 0.503469 |
Target: 5'- uUCG-GCCAGGCGagcgucCCGCGUUAUGCGg -3' miRNA: 3'- -AGCuUGGUCUGCc-----GGCGCAGUACGCg -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 4481 | 0.73 | 0.513059 |
Target: 5'- aCGGACCccgcccGACGGcCCGCGccucgCGUGCGUg -3' miRNA: 3'- aGCUUGGu-----CUGCC-GGCGCa----GUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 133668 | 0.73 | 0.522722 |
Target: 5'- -aGAGCacuacuGGCGG-CGCGUCGUGCGUg -3' miRNA: 3'- agCUUGgu----CUGCCgGCGCAGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 118735 | 0.73 | 0.529529 |
Target: 5'- gCGAguGCCuGGCGGCCGCGggaaUCcccuggccgcccugAUGCGCg -3' miRNA: 3'- aGCU--UGGuCUGCCGGCGC----AG--------------UACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 71354 | 0.73 | 0.532456 |
Target: 5'- aCGGcccacGCCAGGCGGaCCGCGagGggGCGCc -3' miRNA: 3'- aGCU-----UGGUCUGCC-GGCGCagUa-CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 77375 | 0.73 | 0.532456 |
Target: 5'- aCaGGCCAGACGGgCGCGg---GCGCg -3' miRNA: 3'- aGcUUGGUCUGCCgGCGCaguaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 60000 | 0.72 | 0.581975 |
Target: 5'- -gGGACCcgggGGACGGCCGgGUCcggagccGCGCu -3' miRNA: 3'- agCUUGG----UCUGCCGGCgCAGua-----CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 102836 | 0.74 | 0.493012 |
Target: 5'- aCGAGCCGGucgccccGCGGcCCGCGUacacCAUGUGUa -3' miRNA: 3'- aGCUUGGUC-------UGCC-GGCGCA----GUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 82728 | 0.74 | 0.484531 |
Target: 5'- cCGGggucuGCgGGGCGGCgGCGUCGUcggGCGCu -3' miRNA: 3'- aGCU-----UGgUCUGCCGgCGCAGUA---CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 3005 | 0.74 | 0.47519 |
Target: 5'- gCGGccGCCAGcgcguCGGCgGCGUCcgGUGCGCu -3' miRNA: 3'- aGCU--UGGUCu----GCCGgCGCAG--UACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 128540 | 0.8 | 0.240498 |
Target: 5'- cCGcAGCCAGACGGCggccCGCGUCcaggGCGCg -3' miRNA: 3'- aGC-UUGGUCUGCCG----GCGCAGua--CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 2212 | 0.77 | 0.325094 |
Target: 5'- cCGc-CCAGGCGGCCGUGUCcgGCccGCa -3' miRNA: 3'- aGCuuGGUCUGCCGGCGCAGuaCG--CG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 91159 | 0.77 | 0.339919 |
Target: 5'- uUCGAggGCCAGgacACGGCCGCGgCccGCGCc -3' miRNA: 3'- -AGCU--UGGUC---UGCCGGCGCaGuaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 81349 | 0.76 | 0.371014 |
Target: 5'- cCGcAACCAGGCGGCCgggGCGUCGccCGCg -3' miRNA: 3'- aGC-UUGGUCUGCCGG---CGCAGUacGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 3783 | 0.76 | 0.379085 |
Target: 5'- aUCGGcggcucaugGCCAcGGCGGCCGcCG-CGUGCGCc -3' miRNA: 3'- -AGCU---------UGGU-CUGCCGGC-GCaGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 151451 | 0.75 | 0.403994 |
Target: 5'- gCGGcgGCgGGGCGGCCGCGg---GCGCg -3' miRNA: 3'- aGCU--UGgUCUGCCGGCGCaguaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 135576 | 0.75 | 0.412524 |
Target: 5'- cUCGGccGCCAGGuCGGCCGCGcgCugcugGCGCu -3' miRNA: 3'- -AGCU--UGGUCU-GCCGGCGCa-Gua---CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 30182 | 0.75 | 0.447726 |
Target: 5'- cCGGGCCccccgcguccGCGGCCGCGUCGggacccGCGCg -3' miRNA: 3'- aGCUUGGuc--------UGCCGGCGCAGUa-----CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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