miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 29847 0.66 0.891368
Target:  5'- ----cCCAGcCGGCCGCGgcUCGgacaGCGCc -3'
miRNA:   3'- agcuuGGUCuGCCGGCGC--AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 2742 0.66 0.891368
Target:  5'- gCGGGCCGGcgcgacACGGCCaCGgg--GCGCg -3'
miRNA:   3'- aGCUUGGUC------UGCCGGcGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 19884 0.66 0.890704
Target:  5'- gCGGACCGGugGGUuucUGuCGUCggaggcccccgggGUGCGUc -3'
miRNA:   3'- aGCUUGGUCugCCG---GC-GCAG-------------UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 151289 0.66 0.884632
Target:  5'- -gGGGCCGGGgGGCgGCGgcgGUGgGCc -3'
miRNA:   3'- agCUUGGUCUgCCGgCGCag-UACgCG- -5'
5649 3' -56.6 NC_001806.1 + 83992 0.66 0.884632
Target:  5'- gCGAGCCGGAgGaGUCGCcGgauaCGUGgGCg -3'
miRNA:   3'- aGCUUGGUCUgC-CGGCG-Ca---GUACgCG- -5'
5649 3' -56.6 NC_001806.1 + 37809 0.66 0.884632
Target:  5'- gCGGGCgGGGgGGCaaucgccaGCGUCAUuaGCg -3'
miRNA:   3'- aGCUUGgUCUgCCGg-------CGCAGUAcgCG- -5'
5649 3' -56.6 NC_001806.1 + 96990 0.66 0.884632
Target:  5'- gUCGGuCC--ACGGCCaaGUaCGUGCGCa -3'
miRNA:   3'- -AGCUuGGucUGCCGGcgCA-GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 76241 0.66 0.884632
Target:  5'- cCGGGCCGacgcGCGGCgCGCGaUCGgaagcgugGCGCu -3'
miRNA:   3'- aGCUUGGUc---UGCCG-GCGC-AGUa-------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 134861 0.66 0.877679
Target:  5'- cUCGcaGGCCAGGCGGagcaGCGUC-UGCugGCu -3'
miRNA:   3'- -AGC--UUGGUCUGCCgg--CGCAGuACG--CG- -5'
5649 3' -56.6 NC_001806.1 + 30219 0.66 0.877679
Target:  5'- nCGcccCCGcGCGGCCGUGgcccCGUGCGUg -3'
miRNA:   3'- aGCuu-GGUcUGCCGGCGCa---GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 30297 0.66 0.877679
Target:  5'- -gGAGCCGGccgcccgccccGCGGaCgCGCGcCGUGUGCc -3'
miRNA:   3'- agCUUGGUC-----------UGCC-G-GCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 29958 0.67 0.870511
Target:  5'- gCGAGCCGcGGC-GCCGCGggggGCGUc -3'
miRNA:   3'- aGCUUGGU-CUGcCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 56846 0.67 0.870511
Target:  5'- cCGcGGCCAgGGCGGCCGCGgCggGCcCa -3'
miRNA:   3'- aGC-UUGGU-CUGCCGGCGCaGuaCGcG- -5'
5649 3' -56.6 NC_001806.1 + 151543 0.67 0.870511
Target:  5'- gUGGGcCCGGGCGGCCGgGggcgGCGg -3'
miRNA:   3'- aGCUU-GGUCUGCCGGCgCaguaCGCg -5'
5649 3' -56.6 NC_001806.1 + 98635 0.67 0.870511
Target:  5'- aUCGugggcGGCguGGuauCGGCCGUGUCggGCGUg -3'
miRNA:   3'- -AGC-----UUGguCU---GCCGGCGCAGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 85752 0.67 0.869783
Target:  5'- -gGAGCCGcGCGGCCaCGUCGUccgggggGUGCc -3'
miRNA:   3'- agCUUGGUcUGCCGGcGCAGUA-------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 74537 0.67 0.86611
Target:  5'- cUGGGCCAGcagcuggacagcgacGCGGCCuuuguuccuGCGcCcgGCGCg -3'
miRNA:   3'- aGCUUGGUC---------------UGCCGG---------CGCaGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 86053 0.67 0.863136
Target:  5'- gCGGGCUcguccccugGGGCGGCgGCGUCuagcuCGCg -3'
miRNA:   3'- aGCUUGG---------UCUGCCGgCGCAGuac--GCG- -5'
5649 3' -56.6 NC_001806.1 + 144601 0.67 0.855556
Target:  5'- cCGGGCCccccugcagccgGGGCGGCCaagggGCGUCG-GCGa -3'
miRNA:   3'- aGCUUGG------------UCUGCCGG-----CGCAGUaCGCg -5'
5649 3' -56.6 NC_001806.1 + 23059 0.67 0.855556
Target:  5'- gCGGcaGCgAGGCcGCCGUGgccgcCGUGCGCg -3'
miRNA:   3'- aGCU--UGgUCUGcCGGCGCa----GUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.