Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5649 | 5' | -54.2 | NC_001806.1 | + | 147638 | 0.66 | 0.964184 |
Target: 5'- uGGGGCacacGGCGCGCGUCcgcgGGGCg-- -3' miRNA: 3'- gCUCUGca--UCGCGCGCAGa---UCUGaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 48417 | 0.66 | 0.959657 |
Target: 5'- gCGAgGACGUGGCGauggcgcaugccgaCGCG-CUAGACg-- -3' miRNA: 3'- -GCU-CUGCAUCGC--------------GCGCaGAUCUGaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 25425 | 0.66 | 0.958558 |
Target: 5'- -cGGugGUGGUGCGCGggcgcccccggagggUUUGGAuCUCUg -3' miRNA: 3'- gcUCugCAUCGCGCGC---------------AGAUCU-GAGA- -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 86067 | 0.66 | 0.953163 |
Target: 5'- uGGGGCG--GCG-GCGUCUAG-CUCg -3' miRNA: 3'- gCUCUGCauCGCgCGCAGAUCuGAGa -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 113690 | 0.66 | 0.949031 |
Target: 5'- cCGGGACcugGUGGCGCaCGUCgAGGCcCUg -3' miRNA: 3'- -GCUCUG---CAUCGCGcGCAGaUCUGaGA- -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 99610 | 0.66 | 0.944665 |
Target: 5'- aGAGG---GGCGCGCGUCUGGGu--- -3' miRNA: 3'- gCUCUgcaUCGCGCGCAGAUCUgaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 112697 | 0.67 | 0.924802 |
Target: 5'- aGAcGACGcgcguGCGCGCGgaUCUGGugUCc -3' miRNA: 3'- gCU-CUGCau---CGCGCGC--AGAUCugAGa -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 83091 | 0.67 | 0.924802 |
Target: 5'- gGGGGCGUucgAGCGCGCGUauguGGC-CUu -3' miRNA: 3'- gCUCUGCA---UCGCGCGCAgau-CUGaGA- -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 52884 | 0.68 | 0.905506 |
Target: 5'- gCGGcGACGUgccccuccucguccGGCGCGCGUCUcuggGGAgcCUCg -3' miRNA: 3'- -GCU-CUGCA--------------UCGCGCGCAGA----UCU--GAGa -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 135112 | 0.68 | 0.901077 |
Target: 5'- gGGGGCGggggcAGCGCuGCGUgCUGGACg-- -3' miRNA: 3'- gCUCUGCa----UCGCG-CGCA-GAUCUGaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 114798 | 0.69 | 0.873595 |
Target: 5'- uGAGaACGUgcuguucucggAGCGCGCGUCggAGGCg-- -3' miRNA: 3'- gCUC-UGCA-----------UCGCGCGCAGa-UCUGaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 15624 | 0.69 | 0.866165 |
Target: 5'- uGGGGCGaAGCGCGCcGUCgaaggugaGGGCUUUg -3' miRNA: 3'- gCUCUGCaUCGCGCG-CAGa-------UCUGAGA- -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 69128 | 0.7 | 0.834375 |
Target: 5'- gGGGACGcuaaUGGCGCGCGUgcGGACg-- -3' miRNA: 3'- gCUCUGC----AUCGCGCGCAgaUCUGaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 67054 | 0.7 | 0.825943 |
Target: 5'- uCGGcGGCGUcGCGCGCGUCguacgAGGCg-- -3' miRNA: 3'- -GCU-CUGCAuCGCGCGCAGa----UCUGaga -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 20418 | 0.71 | 0.790514 |
Target: 5'- gGGGACGgccaacgGGCGCGCG---GGGCUCg -3' miRNA: 3'- gCUCUGCa------UCGCGCGCagaUCUGAGa -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 91199 | 0.79 | 0.334741 |
Target: 5'- uCGGGGCGUaccuGGCGCGCGcCgcgGGACUCg -3' miRNA: 3'- -GCUCUGCA----UCGCGCGCaGa--UCUGAGa -5' |
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5649 | 5' | -54.2 | NC_001806.1 | + | 82910 | 1.07 | 0.005759 |
Target: 5'- gCGAGACGUAGCGCGCGUCUAGACUCUc -3' miRNA: 3'- -GCUCUGCAUCGCGCGCAGAUCUGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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