miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 5' -54.2 NC_001806.1 + 147638 0.66 0.964184
Target:  5'- uGGGGCacacGGCGCGCGUCcgcgGGGCg-- -3'
miRNA:   3'- gCUCUGca--UCGCGCGCAGa---UCUGaga -5'
5649 5' -54.2 NC_001806.1 + 48417 0.66 0.959657
Target:  5'- gCGAgGACGUGGCGauggcgcaugccgaCGCG-CUAGACg-- -3'
miRNA:   3'- -GCU-CUGCAUCGC--------------GCGCaGAUCUGaga -5'
5649 5' -54.2 NC_001806.1 + 25425 0.66 0.958558
Target:  5'- -cGGugGUGGUGCGCGggcgcccccggagggUUUGGAuCUCUg -3'
miRNA:   3'- gcUCugCAUCGCGCGC---------------AGAUCU-GAGA- -5'
5649 5' -54.2 NC_001806.1 + 86067 0.66 0.953163
Target:  5'- uGGGGCG--GCG-GCGUCUAG-CUCg -3'
miRNA:   3'- gCUCUGCauCGCgCGCAGAUCuGAGa -5'
5649 5' -54.2 NC_001806.1 + 113690 0.66 0.949031
Target:  5'- cCGGGACcugGUGGCGCaCGUCgAGGCcCUg -3'
miRNA:   3'- -GCUCUG---CAUCGCGcGCAGaUCUGaGA- -5'
5649 5' -54.2 NC_001806.1 + 99610 0.66 0.944665
Target:  5'- aGAGG---GGCGCGCGUCUGGGu--- -3'
miRNA:   3'- gCUCUgcaUCGCGCGCAGAUCUgaga -5'
5649 5' -54.2 NC_001806.1 + 112697 0.67 0.924802
Target:  5'- aGAcGACGcgcguGCGCGCGgaUCUGGugUCc -3'
miRNA:   3'- gCU-CUGCau---CGCGCGC--AGAUCugAGa -5'
5649 5' -54.2 NC_001806.1 + 83091 0.67 0.924802
Target:  5'- gGGGGCGUucgAGCGCGCGUauguGGC-CUu -3'
miRNA:   3'- gCUCUGCA---UCGCGCGCAgau-CUGaGA- -5'
5649 5' -54.2 NC_001806.1 + 52884 0.68 0.905506
Target:  5'- gCGGcGACGUgccccuccucguccGGCGCGCGUCUcuggGGAgcCUCg -3'
miRNA:   3'- -GCU-CUGCA--------------UCGCGCGCAGA----UCU--GAGa -5'
5649 5' -54.2 NC_001806.1 + 135112 0.68 0.901077
Target:  5'- gGGGGCGggggcAGCGCuGCGUgCUGGACg-- -3'
miRNA:   3'- gCUCUGCa----UCGCG-CGCA-GAUCUGaga -5'
5649 5' -54.2 NC_001806.1 + 114798 0.69 0.873595
Target:  5'- uGAGaACGUgcuguucucggAGCGCGCGUCggAGGCg-- -3'
miRNA:   3'- gCUC-UGCA-----------UCGCGCGCAGa-UCUGaga -5'
5649 5' -54.2 NC_001806.1 + 15624 0.69 0.866165
Target:  5'- uGGGGCGaAGCGCGCcGUCgaaggugaGGGCUUUg -3'
miRNA:   3'- gCUCUGCaUCGCGCG-CAGa-------UCUGAGA- -5'
5649 5' -54.2 NC_001806.1 + 69128 0.7 0.834375
Target:  5'- gGGGACGcuaaUGGCGCGCGUgcGGACg-- -3'
miRNA:   3'- gCUCUGC----AUCGCGCGCAgaUCUGaga -5'
5649 5' -54.2 NC_001806.1 + 67054 0.7 0.825943
Target:  5'- uCGGcGGCGUcGCGCGCGUCguacgAGGCg-- -3'
miRNA:   3'- -GCU-CUGCAuCGCGCGCAGa----UCUGaga -5'
5649 5' -54.2 NC_001806.1 + 20418 0.71 0.790514
Target:  5'- gGGGACGgccaacgGGCGCGCG---GGGCUCg -3'
miRNA:   3'- gCUCUGCa------UCGCGCGCagaUCUGAGa -5'
5649 5' -54.2 NC_001806.1 + 91199 0.79 0.334741
Target:  5'- uCGGGGCGUaccuGGCGCGCGcCgcgGGACUCg -3'
miRNA:   3'- -GCUCUGCA----UCGCGCGCaGa--UCUGAGa -5'
5649 5' -54.2 NC_001806.1 + 82910 1.07 0.005759
Target:  5'- gCGAGACGUAGCGCGCGUCUAGACUCUc -3'
miRNA:   3'- -GCUCUGCAUCGCGCGCAGAUCUGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.