miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5650 3' -59.6 NC_001806.1 + 283 0.66 0.816983
Target:  5'- cCCGCuccuccccccGCUCCCGC--GGCCCCg -3'
miRNA:   3'- -GGCGccucuu----UGAGGGCGugCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 151993 0.66 0.816983
Target:  5'- cCCGCuccuccccccGCUCCCGC--GGCCCCg -3'
miRNA:   3'- -GGCGccucuu----UGAGGGCGugCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 75328 0.66 0.816152
Target:  5'- gCCGCGG-GAuACgucaaggcgaCUCGguUGGCCCUg -3'
miRNA:   3'- -GGCGCCuCUuUGa---------GGGCguGCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 118898 0.66 0.816152
Target:  5'- gCgGUGGGGGAGCUUCU----GGCCCCc -3'
miRNA:   3'- -GgCGCCUCUUUGAGGGcgugCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 77960 0.66 0.816152
Target:  5'- aCGCGGcggccccGggGC-CgCCGCuCGGaCCCCa -3'
miRNA:   3'- gGCGCCu------CuuUGaG-GGCGuGCC-GGGG- -5'
5650 3' -59.6 NC_001806.1 + 78899 0.66 0.816152
Target:  5'- cCCGCGccuGuccgcGCUCaUCGCcgaGCGGCCCCu -3'
miRNA:   3'- -GGCGCcu-Cuu---UGAG-GGCG---UGCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 125861 0.66 0.816152
Target:  5'- gCCGCGGAcgccguGGCgCCC---CGGCCCCu -3'
miRNA:   3'- -GGCGCCUcu----UUGaGGGcguGCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 6294 0.66 0.816152
Target:  5'- aCGCGGGGggGaaagaCCCGC-CcaCCCCa -3'
miRNA:   3'- gGCGCCUCuuUga---GGGCGuGccGGGG- -5'
5650 3' -59.6 NC_001806.1 + 76559 0.66 0.816152
Target:  5'- gCUGCgGGAGguGCUggCCgCGCGCGaGCgCCg -3'
miRNA:   3'- -GGCG-CCUCuuUGA--GG-GCGUGC-CGgGG- -5'
5650 3' -59.6 NC_001806.1 + 151465 0.66 0.816152
Target:  5'- gCCGCGGGcgcGCUCCUGacCGCgGGUUCCg -3'
miRNA:   3'- -GGCGCCUcuuUGAGGGC--GUG-CCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 21604 0.66 0.816152
Target:  5'- gCCGCGGAGA--Cg-UCGuCACGGCCg- -3'
miRNA:   3'- -GGCGCCUCUuuGagGGC-GUGCCGGgg -5'
5650 3' -59.6 NC_001806.1 + 1489 0.66 0.816152
Target:  5'- aCCaGCGGGGggGCgUCgUCGUcgGGCUCCa -3'
miRNA:   3'- -GG-CGCCUCuuUG-AG-GGCGugCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 43297 0.66 0.816152
Target:  5'- -gGCGGAGccGCggCUGCAggaGGCCCUg -3'
miRNA:   3'- ggCGCCUCuuUGagGGCGUg--CCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 47173 0.66 0.81532
Target:  5'- aCGCGGAcGgcGCUucgccaccgccccCCCGCcCGGCCg- -3'
miRNA:   3'- gGCGCCU-CuuUGA-------------GGGCGuGCCGGgg -5'
5650 3' -59.6 NC_001806.1 + 57275 0.66 0.811135
Target:  5'- -gGCGGccuGAagccagauaugcaugAACcCCCGCGCcagGGCCCCc -3'
miRNA:   3'- ggCGCCu--CU---------------UUGaGGGCGUG---CCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 101839 0.66 0.80776
Target:  5'- -gGCGGuGAGGCgcaccagCgCCGCcugGCGGgCCCCc -3'
miRNA:   3'- ggCGCCuCUUUGa------G-GGCG---UGCC-GGGG- -5'
5650 3' -59.6 NC_001806.1 + 103489 0.66 0.80776
Target:  5'- aCC-CGGGGGcuguugucggguGGCUCCCGC-CGGaUCCa -3'
miRNA:   3'- -GGcGCCUCU------------UUGAGGGCGuGCCgGGG- -5'
5650 3' -59.6 NC_001806.1 + 3539 0.66 0.80776
Target:  5'- cCCGCGGGGGAGg-CggGCGCGgcggacagccGCCCCa -3'
miRNA:   3'- -GGCGCCUCUUUgaGggCGUGC----------CGGGG- -5'
5650 3' -59.6 NC_001806.1 + 72978 0.66 0.80776
Target:  5'- uCgGgGGAGAAAacgaaaCGCuCGGCCCCc -3'
miRNA:   3'- -GgCgCCUCUUUgagg--GCGuGCCGGGG- -5'
5650 3' -59.6 NC_001806.1 + 150799 0.66 0.806913
Target:  5'- gUGCGGA---GCUCCCGggagcucCGCGGaagaCCCa -3'
miRNA:   3'- gGCGCCUcuuUGAGGGC-------GUGCCg---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.