miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5650 5' -56.1 NC_001806.1 + 151073 0.66 0.887846
Target:  5'- -cGGGGGUcGCGGG-GGUcgcgGggGUCgCGg -3'
miRNA:   3'- gaCCCCCA-CGCCCaCCAa---CaaUAG-GU- -5'
5650 5' -56.1 NC_001806.1 + 16839 0.67 0.858714
Target:  5'- gCUGGGuGGUGUGGuGUGGgaagGUUugggggucUCCGg -3'
miRNA:   3'- -GACCC-CCACGCC-CACCaa--CAAu-------AGGU- -5'
5650 5' -56.1 NC_001806.1 + 9781 0.67 0.834688
Target:  5'- gUGGGGaggggccccgacGUGCGGGUGGgUGggcucggCCAa -3'
miRNA:   3'- gACCCC------------CACGCCCACCaACaaua---GGU- -5'
5650 5' -56.1 NC_001806.1 + 134312 0.69 0.743832
Target:  5'- -cGGGGG-GCGGGUuGUUGg---CCAg -3'
miRNA:   3'- gaCCCCCaCGCCCAcCAACaauaGGU- -5'
5650 5' -56.1 NC_001806.1 + 8269 0.7 0.694156
Target:  5'- ---uGGGUGCGGGUGGUacggggugguuUGUUcAUCCu -3'
miRNA:   3'- gaccCCCACGCCCACCA-----------ACAA-UAGGu -5'
5650 5' -56.1 NC_001806.1 + 101804 0.7 0.684028
Target:  5'- gUGGGGuuuGUGCGGGUgcGGUUGaugaguUCCAg -3'
miRNA:   3'- gACCCC---CACGCCCA--CCAACaau---AGGU- -5'
5650 5' -56.1 NC_001806.1 + 103707 0.7 0.683013
Target:  5'- gUGGGGGUuuggucgGCGGGUGGUaacUGgcgggCCGc -3'
miRNA:   3'- gACCCCCA-------CGCCCACCA---ACaaua-GGU- -5'
5650 5' -56.1 NC_001806.1 + 31712 0.72 0.58178
Target:  5'- gUGGGGGUGCGuGGgagUGGggGUg--CCAu -3'
miRNA:   3'- gACCCCCACGC-CC---ACCaaCAauaGGU- -5'
5650 5' -56.1 NC_001806.1 + 45516 0.72 0.571633
Target:  5'- gUGaGGGGUGgGGGUGGagGgUGUCCc -3'
miRNA:   3'- gAC-CCCCACgCCCACCaaCaAUAGGu -5'
5650 5' -56.1 NC_001806.1 + 117069 0.75 0.410055
Target:  5'- -gGGGGGUGgGGGUGGgc---AUCCAg -3'
miRNA:   3'- gaCCCCCACgCCCACCaacaaUAGGU- -5'
5650 5' -56.1 NC_001806.1 + 34088 0.76 0.376264
Target:  5'- gUGGGGGUGUcgguGGGUGGUUGUUuUUUg -3'
miRNA:   3'- gACCCCCACG----CCCACCAACAAuAGGu -5'
5650 5' -56.1 NC_001806.1 + 81483 1.08 0.002946
Target:  5'- cCUGGGGGUGCGGGUGGUUGUUAUCCAu -3'
miRNA:   3'- -GACCCCCACGCCCACCAACAAUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.