miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5651 3' -61.2 NC_001806.1 + 4293 0.66 0.696713
Target:  5'- -cUGC-CCGGcCGUgaAGCgGCCCgUGGCGu -3'
miRNA:   3'- uuGCGuGGCCaGCA--UCG-CGGG-ACCGC- -5'
5651 3' -61.2 NC_001806.1 + 40578 0.66 0.696713
Target:  5'- aAGCGcCGCgGGUCGgcGUGCgC-GGCGa -3'
miRNA:   3'- -UUGC-GUGgCCAGCauCGCGgGaCCGC- -5'
5651 3' -61.2 NC_001806.1 + 77129 0.66 0.696713
Target:  5'- gAGCGgGCCGGggcCGUGGaggaGCUCggggGGCGc -3'
miRNA:   3'- -UUGCgUGGCCa--GCAUCg---CGGGa---CCGC- -5'
5651 3' -61.2 NC_001806.1 + 51948 0.66 0.696713
Target:  5'- -cUGUACCGGUg--GGCGUCCUGGa- -3'
miRNA:   3'- uuGCGUGGCCAgcaUCGCGGGACCgc -5'
5651 3' -61.2 NC_001806.1 + 119034 0.66 0.677068
Target:  5'- cGGCGCugCGccuugCGUGGgGCUCgggGGCGa -3'
miRNA:   3'- -UUGCGugGCca---GCAUCgCGGGa--CCGC- -5'
5651 3' -61.2 NC_001806.1 + 78278 0.66 0.677068
Target:  5'- --gGCGCCGcggcaaguuGUcCGaaaccgacccccUGGCGCCCUGGCGc -3'
miRNA:   3'- uugCGUGGC---------CA-GC------------AUCGCGGGACCGC- -5'
5651 3' -61.2 NC_001806.1 + 104700 0.66 0.676081
Target:  5'- gGACGCGgCGGUgGUaaugacaAGCGCCCagauaacaaugGGCa -3'
miRNA:   3'- -UUGCGUgGCCAgCA-------UCGCGGGa----------CCGc -5'
5651 3' -61.2 NC_001806.1 + 93874 0.66 0.667189
Target:  5'- cGGCuuGCCGGUCGgcGgGCCCgcgggaGGCc -3'
miRNA:   3'- -UUGcgUGGCCAGCauCgCGGGa-----CCGc -5'
5651 3' -61.2 NC_001806.1 + 70586 0.66 0.667189
Target:  5'- cGCGCGCUGGUC---GCGuCCCUcGCGa -3'
miRNA:   3'- uUGCGUGGCCAGcauCGC-GGGAcCGC- -5'
5651 3' -61.2 NC_001806.1 + 70036 0.66 0.657283
Target:  5'- -cCGC-CCGGUCG-AGUucGCCCUGcGUGu -3'
miRNA:   3'- uuGCGuGGCCAGCaUCG--CGGGAC-CGC- -5'
5651 3' -61.2 NC_001806.1 + 26969 0.66 0.657283
Target:  5'- uGGCGCGCCGcGgcUCGUGG-GCCCgcgagcgGGCc -3'
miRNA:   3'- -UUGCGUGGC-C--AGCAUCgCGGGa------CCGc -5'
5651 3' -61.2 NC_001806.1 + 125856 0.66 0.657283
Target:  5'- cGGC-CGCCGcGgacgcCGUGGCGCCCcGGCc -3'
miRNA:   3'- -UUGcGUGGC-Ca----GCAUCGCGGGaCCGc -5'
5651 3' -61.2 NC_001806.1 + 83661 0.66 0.637423
Target:  5'- -cCGUACCGacggCGgGGUGCCCgGGCGg -3'
miRNA:   3'- uuGCGUGGCca--GCaUCGCGGGaCCGC- -5'
5651 3' -61.2 NC_001806.1 + 151377 0.67 0.627483
Target:  5'- gGACGCGgacUCGGgaaCGUGGaGCCaCUGGCGc -3'
miRNA:   3'- -UUGCGU---GGCCa--GCAUCgCGG-GACCGC- -5'
5651 3' -61.2 NC_001806.1 + 1599 0.67 0.617546
Target:  5'- cACGUACaCGGgccgcagCGgcGCGCCCaGGCc -3'
miRNA:   3'- uUGCGUG-GCCa------GCauCGCGGGaCCGc -5'
5651 3' -61.2 NC_001806.1 + 91185 0.67 0.617546
Target:  5'- -cCGCGCCaacgccGUCGgGGCGUaCCUGGCGc -3'
miRNA:   3'- uuGCGUGGc-----CAGCaUCGCG-GGACCGC- -5'
5651 3' -61.2 NC_001806.1 + 135909 0.67 0.617546
Target:  5'- gAACGCACgGuGUCGUuaauGuCGCCUacgUGGCGc -3'
miRNA:   3'- -UUGCGUGgC-CAGCAu---C-GCGGG---ACCGC- -5'
5651 3' -61.2 NC_001806.1 + 1680 0.67 0.617546
Target:  5'- cGGCGCGCCGG-----GCGCCaUGGCGu -3'
miRNA:   3'- -UUGCGUGGCCagcauCGCGGgACCGC- -5'
5651 3' -61.2 NC_001806.1 + 137639 0.67 0.617546
Target:  5'- gAACGgACCcuggGGUUGgccgagGGCGCCCUGacGCGg -3'
miRNA:   3'- -UUGCgUGG----CCAGCa-----UCGCGGGAC--CGC- -5'
5651 3' -61.2 NC_001806.1 + 2078 0.67 0.617546
Target:  5'- gAGC-CGCCGGUCGccGGCGC--UGGCGa -3'
miRNA:   3'- -UUGcGUGGCCAGCa-UCGCGggACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.