miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5651 5' -54.4 NC_001806.1 + 41430 0.66 0.946579
Target:  5'- gCGCGCCguggucgggGUgcGCCGCC-GCuuCGGCGg -3'
miRNA:   3'- -GCGCGGa--------CAa-UGGCGGaUGuuGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 112194 0.66 0.945239
Target:  5'- gGCGCCgccccuggcuuuguUGUUGCCGaugcaacgauaCCUggACAACGGCc -3'
miRNA:   3'- gCGCGG--------------ACAAUGGC-----------GGA--UGUUGUCGu -5'
5651 5' -54.4 NC_001806.1 + 14843 0.66 0.942025
Target:  5'- cCGCGUCUGgaccaACCGCCacACAGguGUg -3'
miRNA:   3'- -GCGCGGACaa---UGGCGGa-UGUUguCGu -5'
5651 5' -54.4 NC_001806.1 + 67448 0.66 0.937225
Target:  5'- gCGCGUCUG-UGCCGUCcaggccaaGCAaccACAGCGu -3'
miRNA:   3'- -GCGCGGACaAUGGCGGa-------UGU---UGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 24952 0.66 0.937225
Target:  5'- gGCGCCUGgga-CGaagACGACGGCGg -3'
miRNA:   3'- gCGCGGACaaugGCggaUGUUGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 28972 0.66 0.937225
Target:  5'- uGCGaCCgag-ACCuGCCggACAGCAGCGa -3'
miRNA:   3'- gCGC-GGacaaUGG-CGGa-UGUUGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 51404 0.66 0.937225
Target:  5'- gCGCgGCC-GUgGgCGCCuUGCGGCAGCGc -3'
miRNA:   3'- -GCG-CGGaCAaUgGCGG-AUGUUGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 103045 0.66 0.932179
Target:  5'- aGCGCCUccagGgCGCCUGCGAUcucguGCAc -3'
miRNA:   3'- gCGCGGAcaa-UgGCGGAUGUUGu----CGU- -5'
5651 5' -54.4 NC_001806.1 + 112089 0.66 0.932179
Target:  5'- -uCGCCaGUUGCgCGCCaucCAACAGCu -3'
miRNA:   3'- gcGCGGaCAAUG-GCGGau-GUUGUCGu -5'
5651 5' -54.4 NC_001806.1 + 147434 0.66 0.931661
Target:  5'- cCGCGCCUcUUccucggacgcaccGCCGCCUccugcucgACAgagGCGGCGg -3'
miRNA:   3'- -GCGCGGAcAA-------------UGGCGGA--------UGU---UGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 83945 0.66 0.926885
Target:  5'- uCGCGCC----GCCGCUcGCAACGGgGa -3'
miRNA:   3'- -GCGCGGacaaUGGCGGaUGUUGUCgU- -5'
5651 5' -54.4 NC_001806.1 + 103000 0.66 0.926885
Target:  5'- cCGCGCgCggcauCCGCCUcuuCGGCGGCGg -3'
miRNA:   3'- -GCGCG-GacaauGGCGGAu--GUUGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 103100 0.66 0.925797
Target:  5'- gGCGCUcgauaucgacggGgagcucgGCCGCCUGCAugGCGGCGu -3'
miRNA:   3'- gCGCGGa-----------Caa-----UGGCGGAUGU--UGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 130802 0.67 0.9179
Target:  5'- uGUGCCUGUgcagcaccauggccGCgCGCCUGCAuugggacucgGCGGCc -3'
miRNA:   3'- gCGCGGACAa-------------UG-GCGGAUGU----------UGUCGu -5'
5651 5' -54.4 NC_001806.1 + 78900 0.67 0.915555
Target:  5'- cCGCGCCUGUccgcgcucAUCGCCg--AGCGGCc -3'
miRNA:   3'- -GCGCGGACAa-------UGGCGGaugUUGUCGu -5'
5651 5' -54.4 NC_001806.1 + 23462 0.67 0.915555
Target:  5'- gGCGCCccggGCCGCC-GCGGC-GCAg -3'
miRNA:   3'- gCGCGGacaaUGGCGGaUGUUGuCGU- -5'
5651 5' -54.4 NC_001806.1 + 3032 0.67 0.909519
Target:  5'- gGUGCgCUGgccGCCGCCgcCAGCAGgGg -3'
miRNA:   3'- gCGCG-GACaa-UGGCGGauGUUGUCgU- -5'
5651 5' -54.4 NC_001806.1 + 127768 0.67 0.909519
Target:  5'- gCGgGCCUGUggcgGCCGUCUcGCGAUccgcGCAu -3'
miRNA:   3'- -GCgCGGACAa---UGGCGGA-UGUUGu---CGU- -5'
5651 5' -54.4 NC_001806.1 + 81944 0.67 0.903239
Target:  5'- -aCGCCUcccGggACCGCCggguuCGGCGGCGa -3'
miRNA:   3'- gcGCGGA---CaaUGGCGGau---GUUGUCGU- -5'
5651 5' -54.4 NC_001806.1 + 95506 0.67 0.903239
Target:  5'- gGCGgCUGUacgcggACCGCCUGacgaAGCGGUc -3'
miRNA:   3'- gCGCgGACAa-----UGGCGGAUg---UUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.