miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5652 3' -54.2 NC_001806.1 + 99993 0.66 0.968667
Target:  5'- uCCCCGGGguaguACGGGUAguccGCGUCCGGu -3'
miRNA:   3'- -GGGGUUU-----UGCCCGUacauCGUGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 75581 0.66 0.968667
Target:  5'- cCCCCA--GCGGGC-----GCGCCCu- -3'
miRNA:   3'- -GGGGUuuUGCCCGuacauCGUGGGcc -5'
5652 3' -54.2 NC_001806.1 + 134456 0.66 0.968667
Target:  5'- gUUCGAAugGGGaCGUGcGGCgACCCGc -3'
miRNA:   3'- gGGGUUUugCCC-GUACaUCG-UGGGCc -5'
5652 3' -54.2 NC_001806.1 + 124832 0.66 0.968667
Target:  5'- gCCCCGAGccUGGGCGUacccGUG--ACCCGGu -3'
miRNA:   3'- -GGGGUUUu-GCCCGUA----CAUcgUGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 52926 0.66 0.968667
Target:  5'- gCCUCGAucggccACGGGUGUGgggacccGC-CCCGGa -3'
miRNA:   3'- -GGGGUUu-----UGCCCGUACau-----CGuGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 100412 0.66 0.968667
Target:  5'- gCCCGAugucggAACGGGguuCAUGgggGGCAguaCCGGg -3'
miRNA:   3'- gGGGUU------UUGCCC---GUACa--UCGUg--GGCC- -5'
5652 3' -54.2 NC_001806.1 + 109162 0.66 0.968667
Target:  5'- -gCCAGAGuCGGcGCggGgcuccuccAGCGCCCGGu -3'
miRNA:   3'- ggGGUUUU-GCC-CGuaCa-------UCGUGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 125852 0.66 0.968667
Target:  5'- cCCCCGGccgccGCGGaCGccGUGGCGcCCCGGc -3'
miRNA:   3'- -GGGGUUu----UGCCcGUa-CAUCGU-GGGCC- -5'
5652 3' -54.2 NC_001806.1 + 34285 0.66 0.966818
Target:  5'- uCCCgGGGGCGGGaugggGUuuagcggcggggggcGGCGCgCCGGa -3'
miRNA:   3'- -GGGgUUUUGCCCgua--CA---------------UCGUG-GGCC- -5'
5652 3' -54.2 NC_001806.1 + 113752 0.66 0.965543
Target:  5'- gCCCGGAgcuggGCGGGCAg--GGCAagCCGa -3'
miRNA:   3'- gGGGUUU-----UGCCCGUacaUCGUg-GGCc -5'
5652 3' -54.2 NC_001806.1 + 146941 0.66 0.965543
Target:  5'- gUCCAGGAUGGGCA---GGCAguccCCCGu -3'
miRNA:   3'- gGGGUUUUGCCCGUacaUCGU----GGGCc -5'
5652 3' -54.2 NC_001806.1 + 93199 0.66 0.965543
Target:  5'- uCCCCGGGcCGGGUuUGU-GUGCgCGGc -3'
miRNA:   3'- -GGGGUUUuGCCCGuACAuCGUGgGCC- -5'
5652 3' -54.2 NC_001806.1 + 139768 0.66 0.965543
Target:  5'- gCCCGacgccgcgcAggUGGuGCAUGUuuuugaguacGGCACCCGc -3'
miRNA:   3'- gGGGU---------UuuGCC-CGUACA----------UCGUGGGCc -5'
5652 3' -54.2 NC_001806.1 + 107217 0.66 0.965543
Target:  5'- gCCCCucGGCGuacgacGCA-GUGGCGCCCa- -3'
miRNA:   3'- -GGGGuuUUGCc-----CGUaCAUCGUGGGcc -5'
5652 3' -54.2 NC_001806.1 + 30623 0.66 0.965219
Target:  5'- cCCCCuccGACucaGGGCcgGgggGGCgcggccaggguggGCCCGGg -3'
miRNA:   3'- -GGGGuu-UUG---CCCGuaCa--UCG-------------UGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 53708 0.66 0.962206
Target:  5'- cCCCCGGGacuGCGGGgAUaGUAGCAUaugcgaaGGg -3'
miRNA:   3'- -GGGGUUU---UGCCCgUA-CAUCGUGgg-----CC- -5'
5652 3' -54.2 NC_001806.1 + 33104 0.66 0.962206
Target:  5'- -gCCGgcGAGCGGGUccGgacGGgGCCCGGa -3'
miRNA:   3'- ggGGU--UUUGCCCGuaCa--UCgUGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 45365 0.66 0.962206
Target:  5'- aCCCAAAACacuGGCcaaAUGUcuGC-CCCGGg -3'
miRNA:   3'- gGGGUUUUGc--CCG---UACAu-CGuGGGCC- -5'
5652 3' -54.2 NC_001806.1 + 85123 0.66 0.961513
Target:  5'- uCUCCGGGAUGGGCuacuaccuaGGCAUCgGGg -3'
miRNA:   3'- -GGGGUUUUGCCCGuaca-----UCGUGGgCC- -5'
5652 3' -54.2 NC_001806.1 + 77499 0.66 0.958652
Target:  5'- gCCgCCGGGGCGaGGCGUaccugcgaGUgAGCggagGCCCGGg -3'
miRNA:   3'- -GG-GGUUUUGC-CCGUA--------CA-UCG----UGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.