miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5652 5' -58 NC_001806.1 + 152035 0.66 0.819239
Target:  5'- -gCCGcGCGCgCGCAc-GCCGCCCGg- -3'
miRNA:   3'- aaGGCcCGUG-GCGUuuUGGCGGGUag -5'
5652 5' -58 NC_001806.1 + 135524 0.66 0.819239
Target:  5'- -cCCGGaGCAgguccgcccCCGCAGggcGGCUGCCgCAUCc -3'
miRNA:   3'- aaGGCC-CGU---------GGCGUU---UUGGCGG-GUAG- -5'
5652 5' -58 NC_001806.1 + 69742 0.66 0.819239
Target:  5'- gUUCCGGuCAacccagccuucuCCGCGAGACggCGCUCAUCu -3'
miRNA:   3'- -AAGGCCcGU------------GGCGUUUUG--GCGGGUAG- -5'
5652 5' -58 NC_001806.1 + 56994 0.66 0.819239
Target:  5'- -aCCaGGaGCGCCGCAuAGGCggCGCCCAg- -3'
miRNA:   3'- aaGG-CC-CGUGGCGU-UUUG--GCGGGUag -5'
5652 5' -58 NC_001806.1 + 98146 0.66 0.819239
Target:  5'- -cCCgGGGC-CUGCuacAGCCGCCCccugGUCa -3'
miRNA:   3'- aaGG-CCCGuGGCGuu-UUGGCGGG----UAG- -5'
5652 5' -58 NC_001806.1 + 123199 0.66 0.819239
Target:  5'- -cCCGGGuCGCCcgcagggugGCGGAauggaccgagauGCCGCCCAc- -3'
miRNA:   3'- aaGGCCC-GUGG---------CGUUU------------UGGCGGGUag -5'
5652 5' -58 NC_001806.1 + 325 0.66 0.819239
Target:  5'- -gCCGcGCGCgCGCAc-GCCGCCCGg- -3'
miRNA:   3'- aaGGCcCGUG-GCGUuuUGGCGGGUag -5'
5652 5' -58 NC_001806.1 + 57309 0.66 0.819239
Target:  5'- -gCCaGGGCccccacGCaCGCGAGgugugGCCGUCCGUCg -3'
miRNA:   3'- aaGG-CCCG------UG-GCGUUU-----UGGCGGGUAG- -5'
5652 5' -58 NC_001806.1 + 150085 0.66 0.819239
Target:  5'- gUCCcaGGGgaggcaggccCACCGCGGGGCgGCcCCGUCc -3'
miRNA:   3'- aAGG--CCC----------GUGGCGUUUUGgCG-GGUAG- -5'
5652 5' -58 NC_001806.1 + 105138 0.66 0.810539
Target:  5'- cUUUCGGGgGCgGCcguGCCGCCCc-- -3'
miRNA:   3'- -AAGGCCCgUGgCGuuuUGGCGGGuag -5'
5652 5' -58 NC_001806.1 + 43500 0.66 0.810539
Target:  5'- --aCGGG-GCCGU--GGCgGCCCAUCa -3'
miRNA:   3'- aagGCCCgUGGCGuuUUGgCGGGUAG- -5'
5652 5' -58 NC_001806.1 + 38029 0.66 0.810539
Target:  5'- -cCCGGGacCACCGCGAccccGACCccugcgacGCCCAc- -3'
miRNA:   3'- aaGGCCC--GUGGCGUU----UUGG--------CGGGUag -5'
5652 5' -58 NC_001806.1 + 58254 0.66 0.810539
Target:  5'- -gCCGGaGCACCGCccgcauGCUGCaauCGUCg -3'
miRNA:   3'- aaGGCC-CGUGGCGuuu---UGGCGg--GUAG- -5'
5652 5' -58 NC_001806.1 + 5846 0.66 0.810539
Target:  5'- -cCCGGGCcCCcCGGucCCGCCCGc- -3'
miRNA:   3'- aaGGCCCGuGGcGUUuuGGCGGGUag -5'
5652 5' -58 NC_001806.1 + 28530 0.66 0.801676
Target:  5'- -cCCGGGguCGCCGUggGACC-CCCugacUCa -3'
miRNA:   3'- aaGGCCC--GUGGCGuuUUGGcGGGu---AG- -5'
5652 5' -58 NC_001806.1 + 45485 0.66 0.801676
Target:  5'- -gCCGGGCA-CGCcuGAAcCCGCCCu-- -3'
miRNA:   3'- aaGGCCCGUgGCG--UUUuGGCGGGuag -5'
5652 5' -58 NC_001806.1 + 66614 0.66 0.801676
Target:  5'- aUCCGgaGGCGCC-CAAAcaGCCGCuCCAg- -3'
miRNA:   3'- aAGGC--CCGUGGcGUUU--UGGCG-GGUag -5'
5652 5' -58 NC_001806.1 + 147502 0.66 0.801676
Target:  5'- -gCCGGagggggcgGCGCCGCGGGAggGCCCGUg -3'
miRNA:   3'- aaGGCC--------CGUGGCGUUUUggCGGGUAg -5'
5652 5' -58 NC_001806.1 + 24799 0.66 0.801676
Target:  5'- -cCCGGGggcccUGCCGCcggcGCCGCCCGg- -3'
miRNA:   3'- aaGGCCC-----GUGGCGuuu-UGGCGGGUag -5'
5652 5' -58 NC_001806.1 + 20068 0.66 0.801676
Target:  5'- gUCCGcGuGCuCCGCA--GCCGCucCCGUCg -3'
miRNA:   3'- aAGGC-C-CGuGGCGUuuUGGCG--GGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.