miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5653 3' -55.8 NC_001806.1 + 8648 0.66 0.892213
Target:  5'- --cGCGCGUGUCgauGCGGUcuuuuagcggaGCAGC-Ca -3'
miRNA:   3'- uuuUGCGCACAGac-CGCCG-----------UGUCGaG- -5'
5653 3' -55.8 NC_001806.1 + 131957 0.66 0.892213
Target:  5'- --uACGCGUGcgucCUGGCGGCccuGgAGCg- -3'
miRNA:   3'- uuuUGCGCACa---GACCGCCG---UgUCGag -5'
5653 3' -55.8 NC_001806.1 + 99645 0.66 0.892213
Target:  5'- cGGugGCGgGcCUGGCGGgCagGCAGCUg -3'
miRNA:   3'- uUUugCGCaCaGACCGCC-G--UGUCGAg -5'
5653 3' -55.8 NC_001806.1 + 132842 0.66 0.876639
Target:  5'- ---cCGCGgccgucgggcccGUCUGGaCGGCGCGGUUUu -3'
miRNA:   3'- uuuuGCGCa-----------CAGACC-GCCGUGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 33751 0.66 0.870699
Target:  5'- --uGCG-GUGUCggcGGCGGCugcgGCGGCUg -3'
miRNA:   3'- uuuUGCgCACAGa--CCGCCG----UGUCGAg -5'
5653 3' -55.8 NC_001806.1 + 134808 0.66 0.870699
Target:  5'- --cGCGCGaUG-CUGGUGGCgguaaaccGCGGCUg -3'
miRNA:   3'- uuuUGCGC-ACaGACCGCCG--------UGUCGAg -5'
5653 3' -55.8 NC_001806.1 + 114815 0.66 0.863074
Target:  5'- cGGAGCGCGcGUCggaGGCguacuuccugGGC-CAGCUCc -3'
miRNA:   3'- -UUUUGCGCaCAGa--CCG----------CCGuGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 40576 0.67 0.855232
Target:  5'- gGAAGCGCcgcggGUC-GGCGuGCGCGGCg- -3'
miRNA:   3'- -UUUUGCGca---CAGaCCGC-CGUGUCGag -5'
5653 3' -55.8 NC_001806.1 + 116078 0.67 0.843901
Target:  5'- ---cCGCGUGgaucggcgccaugCUGGCGG-ACGGCUUu -3'
miRNA:   3'- uuuuGCGCACa------------GACCGCCgUGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 136393 0.67 0.838923
Target:  5'- -cGAC-CGUGgccagCUGGCGGguCAGCg- -3'
miRNA:   3'- uuUUGcGCACa----GACCGCCguGUCGag -5'
5653 3' -55.8 NC_001806.1 + 128664 0.67 0.838923
Target:  5'- ---cUGCGUGUCcaaccUGaGgGGCACGGCUa -3'
miRNA:   3'- uuuuGCGCACAG-----AC-CgCCGUGUCGAg -5'
5653 3' -55.8 NC_001806.1 + 70931 0.67 0.838923
Target:  5'- cGGAGCGCGccgugGUCgUGGCGcccuuGguCAGCUCg -3'
miRNA:   3'- -UUUUGCGCa----CAG-ACCGC-----CguGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 50348 0.67 0.830471
Target:  5'- uGGGGCGCGUGcuggaugugCUGGCGGUgAUGGCg- -3'
miRNA:   3'- -UUUUGCGCACa--------GACCGCCG-UGUCGag -5'
5653 3' -55.8 NC_001806.1 + 16939 0.67 0.830471
Target:  5'- cGGGACGgcuuUGUCUccGGCGGgACGGCUCc -3'
miRNA:   3'- -UUUUGCgc--ACAGA--CCGCCgUGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 67064 0.67 0.821831
Target:  5'- --cGCGCGcGUCguacgaGGCGGCACAcGC-Cg -3'
miRNA:   3'- uuuUGCGCaCAGa-----CCGCCGUGU-CGaG- -5'
5653 3' -55.8 NC_001806.1 + 96433 0.68 0.794866
Target:  5'- -uGACGCuGgggGUcCUGGUGGCgucgGCGGCUCc -3'
miRNA:   3'- uuUUGCG-Ca--CA-GACCGCCG----UGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 68342 0.68 0.794866
Target:  5'- cAGACGCGcgGgacugCUGGCGGcCGCuGCUg -3'
miRNA:   3'- uUUUGCGCa-Ca----GACCGCC-GUGuCGAg -5'
5653 3' -55.8 NC_001806.1 + 22980 0.68 0.785559
Target:  5'- --cGCGCGUGgCUGcGCGaGCuGCGGUUCg -3'
miRNA:   3'- uuuUGCGCACaGAC-CGC-CG-UGUCGAG- -5'
5653 3' -55.8 NC_001806.1 + 136978 0.68 0.776109
Target:  5'- cGAGCGUGgugcgGUCaUGGCGGCGgcCGGCg- -3'
miRNA:   3'- uUUUGCGCa----CAG-ACCGCCGU--GUCGag -5'
5653 3' -55.8 NC_001806.1 + 50016 0.68 0.773247
Target:  5'- gGAGGCGCGcggGUCUgaccuggacgacagGGCGGCcgagcugaggcgGCAGUUCg -3'
miRNA:   3'- -UUUUGCGCa--CAGA--------------CCGCCG------------UGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.