miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5653 5' -62.9 NC_001806.1 + 100378 0.66 0.639502
Target:  5'- ---aGCUCccGUCGCCGGGCGGCgcgggggccggggugCCCg- -3'
miRNA:   3'- ggcgCGAG--UAGCGGCUCGCCG---------------GGGag -5'
5653 5' -62.9 NC_001806.1 + 44123 0.66 0.63561
Target:  5'- cCCGCGCUCG-CuCgGGGgGGCCUC-Cg -3'
miRNA:   3'- -GGCGCGAGUaGcGgCUCgCCGGGGaG- -5'
5653 5' -62.9 NC_001806.1 + 86390 0.66 0.63561
Target:  5'- -gGCGCUCGgcuaaCGC--GGCGGCCgCUCc -3'
miRNA:   3'- ggCGCGAGUa----GCGgcUCGCCGGgGAG- -5'
5653 5' -62.9 NC_001806.1 + 51338 0.66 0.625878
Target:  5'- aCGCGggCGUUcCCGAGCGGCgcaUCUUCg -3'
miRNA:   3'- gGCGCgaGUAGcGGCUCGCCG---GGGAG- -5'
5653 5' -62.9 NC_001806.1 + 95879 0.66 0.61615
Target:  5'- aCCGCGCUguauuacagCGUCGagaaCGuGgGGCUCCUg -3'
miRNA:   3'- -GGCGCGA---------GUAGCg---GCuCgCCGGGGAg -5'
5653 5' -62.9 NC_001806.1 + 89584 0.66 0.61615
Target:  5'- gCCGgGCUUAUggacCGCCG-GCGGCCg--- -3'
miRNA:   3'- -GGCgCGAGUA----GCGGCuCGCCGGggag -5'
5653 5' -62.9 NC_001806.1 + 33312 0.66 0.61615
Target:  5'- gCCgGCGCUUagggggaggauGUCGCCGAc--GCCCCUUg -3'
miRNA:   3'- -GG-CGCGAG-----------UAGCGGCUcgcCGGGGAG- -5'
5653 5' -62.9 NC_001806.1 + 33133 0.66 0.61615
Target:  5'- aCCGcCGCg----GUCGGG-GGCCCCUCg -3'
miRNA:   3'- -GGC-GCGaguagCGGCUCgCCGGGGAG- -5'
5653 5' -62.9 NC_001806.1 + 2433 0.66 0.61615
Target:  5'- gCGCGCagGggGCCaaagaGGCGGCCCC-Cg -3'
miRNA:   3'- gGCGCGagUagCGGc----UCGCCGGGGaG- -5'
5653 5' -62.9 NC_001806.1 + 26382 0.66 0.61615
Target:  5'- cCCGcCGC-CGcCGCCaucGCGGCCCC-Cg -3'
miRNA:   3'- -GGC-GCGaGUaGCGGcu-CGCCGGGGaG- -5'
5653 5' -62.9 NC_001806.1 + 26486 0.66 0.606433
Target:  5'- cCCGCGgUCAggagcgCGCCc-GCGGCCgCCcCg -3'
miRNA:   3'- -GGCGCgAGUa-----GCGGcuCGCCGG-GGaG- -5'
5653 5' -62.9 NC_001806.1 + 132457 0.66 0.606433
Target:  5'- gCCgGCGCUCGUCGCCcuuuuccggcAGUGGCauaCCa- -3'
miRNA:   3'- -GG-CGCGAGUAGCGGc---------UCGCCGg--GGag -5'
5653 5' -62.9 NC_001806.1 + 5438 0.66 0.606433
Target:  5'- gCCGCGCUCcgUGUgGAcgaucGgGGCgUCCUCg -3'
miRNA:   3'- -GGCGCGAGuaGCGgCU-----CgCCG-GGGAG- -5'
5653 5' -62.9 NC_001806.1 + 3617 0.66 0.605462
Target:  5'- gCGCGCUCGcccggUGCgGcGGCGGCgacggcggcgaccCCCUCg -3'
miRNA:   3'- gGCGCGAGUa----GCGgC-UCGCCG-------------GGGAG- -5'
5653 5' -62.9 NC_001806.1 + 77114 0.66 0.596734
Target:  5'- -gGCGC-CAagagCGCCGAGCGGgCCg-- -3'
miRNA:   3'- ggCGCGaGUa---GCGGCUCGCCgGGgag -5'
5653 5' -62.9 NC_001806.1 + 97495 0.66 0.596734
Target:  5'- gCUGCGCUCcgaGUacGGCGGCUCCUUc -3'
miRNA:   3'- -GGCGCGAGuagCGgcUCGCCGGGGAG- -5'
5653 5' -62.9 NC_001806.1 + 43665 0.66 0.596734
Target:  5'- aUGUgGC-CAUCGCCGAaCGGgCCCUUg -3'
miRNA:   3'- gGCG-CGaGUAGCGGCUcGCCgGGGAG- -5'
5653 5' -62.9 NC_001806.1 + 46693 0.66 0.596734
Target:  5'- cCCGCuccGCUUcUCGCCccAGaCGGCCCgUCg -3'
miRNA:   3'- -GGCG---CGAGuAGCGGc-UC-GCCGGGgAG- -5'
5653 5' -62.9 NC_001806.1 + 99951 0.66 0.596734
Target:  5'- gCCGCGCgccgggaGUCGaccCCGcGCGGCgCgCCUCg -3'
miRNA:   3'- -GGCGCGag-----UAGC---GGCuCGCCG-G-GGAG- -5'
5653 5' -62.9 NC_001806.1 + 102453 0.66 0.59286
Target:  5'- aCUGCGUcuuggggagcuugUCGUCGCgGuAGCGGUacuguggccggccgCCCUCg -3'
miRNA:   3'- -GGCGCG-------------AGUAGCGgC-UCGCCG--------------GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.