miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5657 3' -57.7 NC_001806.1 + 119745 0.66 0.859279
Target:  5'- cCCUGGCCGGcggcgacgGCC--GGACugGCUGUGg -3'
miRNA:   3'- uGGACCGGCUa-------UGGuuCCUG--CGGCAC- -5'
5657 3' -57.7 NC_001806.1 + 27022 0.66 0.859279
Target:  5'- cGCCgggUGGCgGAgGCCGAGGcggucaucGgGCCGUGc -3'
miRNA:   3'- -UGG---ACCGgCUaUGGUUCC--------UgCGGCAC- -5'
5657 3' -57.7 NC_001806.1 + 22750 0.66 0.859279
Target:  5'- cGCCacGCCGAcGCCGAcgacgacgccGGGCGCCGc- -3'
miRNA:   3'- -UGGacCGGCUaUGGUU----------CCUGCGGCac -5'
5657 3' -57.7 NC_001806.1 + 22102 0.66 0.858518
Target:  5'- gGCCUGGgCGAcaGCCGcccgggccucuggGGGGCGCCc-- -3'
miRNA:   3'- -UGGACCgGCUa-UGGU-------------UCCUGCGGcac -5'
5657 3' -57.7 NC_001806.1 + 23587 0.66 0.854684
Target:  5'- cGCCcgcGGCCGccGCCcugGAGGccuacugcuccccgcGCGCCGUGg -3'
miRNA:   3'- -UGGa--CCGGCuaUGG---UUCC---------------UGCGGCAC- -5'
5657 3' -57.7 NC_001806.1 + 132691 0.66 0.851581
Target:  5'- gGCCUGGCCcgcGGUggggGCCAGGGuCGUCc-- -3'
miRNA:   3'- -UGGACCGG---CUA----UGGUUCCuGCGGcac -5'
5657 3' -57.7 NC_001806.1 + 133303 0.66 0.84369
Target:  5'- uGCCUGGCCc---UCGAGGGCGUCu-- -3'
miRNA:   3'- -UGGACCGGcuauGGUUCCUGCGGcac -5'
5657 3' -57.7 NC_001806.1 + 147806 0.66 0.84369
Target:  5'- aGCCUGGCaugGGcGCCGcGGGGgGCCuGUGg -3'
miRNA:   3'- -UGGACCGg--CUaUGGU-UCCUgCGG-CAC- -5'
5657 3' -57.7 NC_001806.1 + 4739 0.66 0.835609
Target:  5'- gGCCccgGGCCGggGCCc-GGuCGCCGg- -3'
miRNA:   3'- -UGGa--CCGGCuaUGGuuCCuGCGGCac -5'
5657 3' -57.7 NC_001806.1 + 70332 0.66 0.83315
Target:  5'- cCCUGGCCGc--CCGGGGGgugcugcaggaccuCGCCGa- -3'
miRNA:   3'- uGGACCGGCuauGGUUCCU--------------GCGGCac -5'
5657 3' -57.7 NC_001806.1 + 32957 0.66 0.827348
Target:  5'- gGCCccgGGCCGggGCCccuuGGGucCGCCGg- -3'
miRNA:   3'- -UGGa--CCGGCuaUGGu---UCCu-GCGGCac -5'
5657 3' -57.7 NC_001806.1 + 151538 0.66 0.827348
Target:  5'- cGCCcgugGGcCCGGgcgGCCGGGGGCGgCGg- -3'
miRNA:   3'- -UGGa---CC-GGCUa--UGGUUCCUGCgGCac -5'
5657 3' -57.7 NC_001806.1 + 65612 0.66 0.818913
Target:  5'- -gCUGGCa-GUACaCGuGGugGCCGUGg -3'
miRNA:   3'- ugGACCGgcUAUG-GUuCCugCGGCAC- -5'
5657 3' -57.7 NC_001806.1 + 115130 0.67 0.810312
Target:  5'- uGCCgcGGCgCGcagggauggACCAcggccAGGACGCCGUGu -3'
miRNA:   3'- -UGGa-CCG-GCua-------UGGU-----UCCUGCGGCAC- -5'
5657 3' -57.7 NC_001806.1 + 148073 0.67 0.810312
Target:  5'- uGCCgugUGGcCCGAUgggcGCCGaggGGGGCGCUGUc -3'
miRNA:   3'- -UGG---ACC-GGCUA----UGGU---UCCUGCGGCAc -5'
5657 3' -57.7 NC_001806.1 + 144348 0.67 0.810312
Target:  5'- cGCCccGcGCCGGUccAUUAAGGGCGCgCGUGc -3'
miRNA:   3'- -UGGa-C-CGGCUA--UGGUUCCUGCG-GCAC- -5'
5657 3' -57.7 NC_001806.1 + 137580 0.67 0.810312
Target:  5'- cCCUGGCCGccuCCGGGGGCGaggaGUu -3'
miRNA:   3'- uGGACCGGCuauGGUUCCUGCgg--CAc -5'
5657 3' -57.7 NC_001806.1 + 26414 0.67 0.810312
Target:  5'- cCCcGGCCGcccggGCCcacGGGCGCCGUc -3'
miRNA:   3'- uGGaCCGGCua---UGGuu-CCUGCGGCAc -5'
5657 3' -57.7 NC_001806.1 + 28682 0.67 0.810312
Target:  5'- aGCCgcccGCC-AUAUUugGGGGACGCCGUGg -3'
miRNA:   3'- -UGGac--CGGcUAUGG--UUCCUGCGGCAC- -5'
5657 3' -57.7 NC_001806.1 + 24122 0.67 0.810312
Target:  5'- gACCUGGCCuucGCCGGG---GCCGUGg -3'
miRNA:   3'- -UGGACCGGcuaUGGUUCcugCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.