miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5657 5' -59.6 NC_001806.1 + 4144 0.66 0.742682
Target:  5'- --gGGCGGCuGuCGCCcAGGCCGCCGu- -3'
miRNA:   3'- uugUCGUCG-C-GCGGcUUCGGUGGCuc -5'
5657 5' -59.6 NC_001806.1 + 98963 0.66 0.742682
Target:  5'- gAAgGGCacgAGCGCGCUGcucagcgccaAGGUCACCGAc -3'
miRNA:   3'- -UUgUCG---UCGCGCGGC----------UUCGGUGGCUc -5'
5657 5' -59.6 NC_001806.1 + 30738 0.66 0.742682
Target:  5'- cGCGGgGGC-CGCCucuuccGCCGCCGGGg -3'
miRNA:   3'- uUGUCgUCGcGCGGcuu---CGGUGGCUC- -5'
5657 5' -59.6 NC_001806.1 + 135621 0.66 0.742682
Target:  5'- cGCuGUuGCGCGCCGGAGCuCGCgGu- -3'
miRNA:   3'- uUGuCGuCGCGCGGCUUCG-GUGgCuc -5'
5657 5' -59.6 NC_001806.1 + 4736 0.66 0.742682
Target:  5'- cGCGGCccCGgGCCGggGCCcggucGCCGGc -3'
miRNA:   3'- uUGUCGucGCgCGGCuuCGG-----UGGCUc -5'
5657 5' -59.6 NC_001806.1 + 123470 0.66 0.736887
Target:  5'- gAGCaAGCGGCGCGUCGugacuuucuaaccGCaCACCGAc -3'
miRNA:   3'- -UUG-UCGUCGCGCGGCuu-----------CG-GUGGCUc -5'
5657 5' -59.6 NC_001806.1 + 46655 0.66 0.733006
Target:  5'- uGCGGCGuCGCGCC----CCACCGAGc -3'
miRNA:   3'- uUGUCGUcGCGCGGcuucGGUGGCUC- -5'
5657 5' -59.6 NC_001806.1 + 22638 0.66 0.733006
Target:  5'- --gGGCgAGCGCGCgGugcCCGCCGGGu -3'
miRNA:   3'- uugUCG-UCGCGCGgCuucGGUGGCUC- -5'
5657 5' -59.6 NC_001806.1 + 94697 0.66 0.733006
Target:  5'- cGCAGguGCG-GCUGGAcGCCAaCGAGc -3'
miRNA:   3'- uUGUCguCGCgCGGCUU-CGGUgGCUC- -5'
5657 5' -59.6 NC_001806.1 + 24568 0.66 0.733006
Target:  5'- cAUGGCgcccGGCGCGCCGGAcuUCugCGAGg -3'
miRNA:   3'- uUGUCG----UCGCGCGGCUUc-GGugGCUC- -5'
5657 5' -59.6 NC_001806.1 + 130072 0.66 0.733006
Target:  5'- gGACGGCuccggGGCGCGCuCGGAGCCcgucuuuacGCCc-- -3'
miRNA:   3'- -UUGUCG-----UCGCGCG-GCUUCGG---------UGGcuc -5'
5657 5' -59.6 NC_001806.1 + 122356 0.66 0.730086
Target:  5'- cACGGUGGCGCGCUGGcggaaguggcgcacGGCCGCg--- -3'
miRNA:   3'- uUGUCGUCGCGCGGCU--------------UCGGUGgcuc -5'
5657 5' -59.6 NC_001806.1 + 92462 0.66 0.723243
Target:  5'- gAGCGcCAaCGCGuCCGAGGCCGCCaAGg -3'
miRNA:   3'- -UUGUcGUcGCGC-GGCUUCGGUGGcUC- -5'
5657 5' -59.6 NC_001806.1 + 35547 0.66 0.723243
Target:  5'- -cCAGCgagccgcucGGCGCGcCCGgcGCCgcGCCGAa -3'
miRNA:   3'- uuGUCG---------UCGCGC-GGCuuCGG--UGGCUc -5'
5657 5' -59.6 NC_001806.1 + 39143 0.66 0.723243
Target:  5'- gAACAGCAGCGC-CCGcAGaCGCCcGAc -3'
miRNA:   3'- -UUGUCGUCGCGcGGCuUCgGUGG-CUc -5'
5657 5' -59.6 NC_001806.1 + 22554 0.66 0.723243
Target:  5'- gAAC-GCGGCGCuGaCgGggGCCGCgGGGa -3'
miRNA:   3'- -UUGuCGUCGCG-C-GgCuuCGGUGgCUC- -5'
5657 5' -59.6 NC_001806.1 + 4440 0.66 0.723243
Target:  5'- cGGgGGCGGCGUccGCCcgGggGCUGCCGGc -3'
miRNA:   3'- -UUgUCGUCGCG--CGG--CuuCGGUGGCUc -5'
5657 5' -59.6 NC_001806.1 + 24681 0.66 0.717349
Target:  5'- aGGCGGU-GCGCGCCGgcccggcccgguggcGcgGGCCGCgGAGg -3'
miRNA:   3'- -UUGUCGuCGCGCGGC---------------U--UCGGUGgCUC- -5'
5657 5' -59.6 NC_001806.1 + 82716 0.66 0.713404
Target:  5'- cACAcGCGGUGU-CCGggGUCugCGGGg -3'
miRNA:   3'- uUGU-CGUCGCGcGGCuuCGGugGCUC- -5'
5657 5' -59.6 NC_001806.1 + 1811 0.66 0.713404
Target:  5'- cGCGGUAGCGCa-CGuuGCCGCCGcGg -3'
miRNA:   3'- uUGUCGUCGCGcgGCuuCGGUGGCuC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.