Results 1 - 20 of 96 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 75966 | 1.09 | 0.001474 |
Target: 5'- aUUCACCGCAUCGACUGGAGCGCGGCCu -3' miRNA: 3'- -AAGUGGCGUAGCUGACCUCGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 22426 | 0.8 | 0.148584 |
Target: 5'- --gGCCGCuUCGGCUGGGGCcuggcgcacgcgGCGGCCg -3' miRNA: 3'- aagUGGCGuAGCUGACCUCG------------CGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 4387 | 0.77 | 0.226202 |
Target: 5'- cUCGCCGCcgCccggGGCUuGGGCGCGGCCu -3' miRNA: 3'- aAGUGGCGuaG----CUGAcCUCGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 93425 | 0.76 | 0.254836 |
Target: 5'- cUgACCGCG-CGugccCUGGAGCGCGGCa -3' miRNA: 3'- aAgUGGCGUaGCu---GACCUCGCGCCGg -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 94502 | 0.75 | 0.306738 |
Target: 5'- -cCACCGCcgCG-CUGGAGCGCGuuCg -3' miRNA: 3'- aaGUGGCGuaGCuGACCUCGCGCcgG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 4652 | 0.74 | 0.320196 |
Target: 5'- gUCuCCGCggCGGCUGGgccggcgGGCGCGGCg -3' miRNA: 3'- aAGuGGCGuaGCUGACC-------UCGCGCCGg -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 75234 | 0.74 | 0.320196 |
Target: 5'- -gCACCGCguccugGUCGACgcggugacggcccUGG-GCGCGGCCg -3' miRNA: 3'- aaGUGGCG------UAGCUG-------------ACCuCGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 65431 | 0.74 | 0.350727 |
Target: 5'- gUCACCGCAaCGAagGGAGCgggggaugccGCGGCCc -3' miRNA: 3'- aAGUGGCGUaGCUgaCCUCG----------CGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 37708 | 0.73 | 0.407468 |
Target: 5'- -cCGCCGCGcgcUCGGagaUGGAGCGCaGGaCCa -3' miRNA: 3'- aaGUGGCGU---AGCUg--ACCUCGCG-CC-GG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 13695 | 0.72 | 0.424704 |
Target: 5'- cUUUGCCGCGaaagCGAUUGGGGU-CGGCCa -3' miRNA: 3'- -AAGUGGCGUa---GCUGACCUCGcGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 3012 | 0.71 | 0.460439 |
Target: 5'- -cCAgCGCGUCGGCggcguccGGuGCGCuGGCCg -3' miRNA: 3'- aaGUgGCGUAGCUGa------CCuCGCG-CCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 50215 | 0.71 | 0.460439 |
Target: 5'- -gCGCUGCuggaccgCGACUGucGCGUGGCCg -3' miRNA: 3'- aaGUGGCGua-----GCUGACcuCGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 146543 | 0.71 | 0.468698 |
Target: 5'- -aCACgG-AUUGGCUGGuguagugGGCGCGGCCa -3' miRNA: 3'- aaGUGgCgUAGCUGACC-------UCGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 63431 | 0.71 | 0.507233 |
Target: 5'- gUUCACCGCGUCuuugaacauGACgaaGGGGCucccggucGUGGCCg -3' miRNA: 3'- -AAGUGGCGUAG---------CUGa--CCUCG--------CGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 102562 | 0.71 | 0.507233 |
Target: 5'- aUCcCCGaacgUGACcGGAGCGCGGUCg -3' miRNA: 3'- aAGuGGCgua-GCUGaCCUCGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 75200 | 0.7 | 0.516839 |
Target: 5'- -aCcCUGCGUCGACggUGGA-UGCGGCCg -3' miRNA: 3'- aaGuGGCGUAGCUG--ACCUcGCGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 103101 | 0.7 | 0.516839 |
Target: 5'- -gCGCuCGaUAUCGACggGGAGCuCGGCCg -3' miRNA: 3'- aaGUG-GC-GUAGCUGa-CCUCGcGCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 2782 | 0.7 | 0.536262 |
Target: 5'- -gCGCCGCggCGGCccGGGGCGCcgcgGGCUg -3' miRNA: 3'- aaGUGGCGuaGCUGa-CCUCGCG----CCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 25929 | 0.7 | 0.536262 |
Target: 5'- -gCGCgCGCG-CGGCgggcgugGGGGCGgGGCCg -3' miRNA: 3'- aaGUG-GCGUaGCUGa------CCUCGCgCCGG- -5' |
|||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 56840 | 0.7 | 0.536262 |
Target: 5'- -aCACCGCcgCGGCc--AGgGCGGCCg -3' miRNA: 3'- aaGUGGCGuaGCUGaccUCgCGCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home