miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 1328 0.69 0.595838
Target:  5'- cUUC-CCGCcgCG---GGGGCGUGGCCa -3'
miRNA:   3'- -AAGuGGCGuaGCugaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 2502 0.69 0.62606
Target:  5'- -cCGCCGCAcgcggccugggCGGCgGGGGCG-GGCCc -3'
miRNA:   3'- aaGUGGCGUa----------GCUGaCCUCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 2782 0.7 0.536262
Target:  5'- -gCGCCGCggCGGCccGGGGCGCcgcgGGCUg -3'
miRNA:   3'- aaGUGGCGuaGCUGa-CCUCGCG----CCGG- -5'
5658 3' -58.9 NC_001806.1 + 3012 0.71 0.460439
Target:  5'- -cCAgCGCGUCGGCggcguccGGuGCGCuGGCCg -3'
miRNA:   3'- aaGUgGCGUAGCUGa------CCuCGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 3496 0.67 0.716109
Target:  5'- gUCGuCgGCGUCGGCgUGGcGgGCGGCg -3'
miRNA:   3'- aAGU-GgCGUAGCUG-ACCuCgCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 3661 0.66 0.77338
Target:  5'- gUCAuCUGCGcCGGCgccGGGGCuccccGCGGCCc -3'
miRNA:   3'- aAGU-GGCGUaGCUGa--CCUCG-----CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 4387 0.77 0.226202
Target:  5'- cUCGCCGCcgCccggGGCUuGGGCGCGGCCu -3'
miRNA:   3'- aAGUGGCGuaG----CUGAcCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 4652 0.74 0.320196
Target:  5'- gUCuCCGCggCGGCUGGgccggcgGGCGCGGCg -3'
miRNA:   3'- aAGuGGCGuaGCUGACC-------UCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 4797 0.66 0.800479
Target:  5'- gUCAUCGuCGUCGGCUcgaaaggcgGGGGUccgggGCGGCg -3'
miRNA:   3'- aAGUGGC-GUAGCUGA---------CCUCG-----CGCCGg -5'
5658 3' -58.9 NC_001806.1 + 5349 0.67 0.735573
Target:  5'- cUUCGuCCGCGuaUCGGCgucccGGCGCGGCg -3'
miRNA:   3'- -AAGU-GGCGU--AGCUGacc--UCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 10720 0.67 0.695373
Target:  5'- aUCGCCaGCGg-GACcGGAGCGCGcaugcacGCCg -3'
miRNA:   3'- aAGUGG-CGUagCUGaCCUCGCGC-------CGG- -5'
5658 3' -58.9 NC_001806.1 + 13695 0.72 0.424704
Target:  5'- cUUUGCCGCGaaagCGAUUGGGGU-CGGCCa -3'
miRNA:   3'- -AAGUGGCGUa---GCUGACCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 16892 0.66 0.800479
Target:  5'- --gGCaCGCGuccUCGGCUGGGGUauaaaaGgGGCCa -3'
miRNA:   3'- aagUG-GCGU---AGCUGACCUCG------CgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 20723 0.68 0.686413
Target:  5'- -cCGCCGgGggGGCggGGGGCcgGCGGCCu -3'
miRNA:   3'- aaGUGGCgUagCUGa-CCUCG--CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 21185 0.69 0.630097
Target:  5'- --gACCGCGacgagcggggggcccUCGGgUGGGGCGCGGagaCg -3'
miRNA:   3'- aagUGGCGU---------------AGCUgACCUCGCGCCg--G- -5'
5658 3' -58.9 NC_001806.1 + 21899 0.68 0.636153
Target:  5'- --gGCCGCAUCGAgCgccgccgGGcccGCGCGGCg -3'
miRNA:   3'- aagUGGCGUAGCU-Ga------CCu--CGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 22426 0.8 0.148584
Target:  5'- --gGCCGCuUCGGCUGGGGCcuggcgcacgcgGCGGCCg -3'
miRNA:   3'- aagUGGCGuAGCUGACCUCG------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 22779 0.67 0.72588
Target:  5'- -gCGCCGCGcccaGGCcGGccGCGUGGCCg -3'
miRNA:   3'- aaGUGGCGUag--CUGaCCu-CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 22820 0.68 0.686413
Target:  5'- -cCGCCuGCcgCGGgaucCUGGAgGCGCuGGCCg -3'
miRNA:   3'- aaGUGG-CGuaGCU----GACCU-CGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 23269 0.68 0.650276
Target:  5'- -cCGCCGCGccgCGGgaGGGGCGCaagcgcaagagucccGGCCc -3'
miRNA:   3'- aaGUGGCGUa--GCUgaCCUCGCG---------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.