miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 5' -55.9 NC_001806.1 + 76001 1.07 0.004074
Target:  5'- cGCGGCCGACACGUACGCCGACAUGUUu -3'
miRNA:   3'- -CGCCGGCUGUGCAUGCGGCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 3802 0.76 0.40164
Target:  5'- gGCGGCCGcCGCGUGCGCCaGGCc---- -3'
miRNA:   3'- -CGCCGGCuGUGCAUGCGG-CUGuacaa -5'
5658 5' -55.9 NC_001806.1 + 2663 0.74 0.51169
Target:  5'- gGCGGCgGcCGCGgGCGCCGcCGUGUg -3'
miRNA:   3'- -CGCCGgCuGUGCaUGCGGCuGUACAa -5'
5658 5' -55.9 NC_001806.1 + 21307 0.73 0.561168
Target:  5'- cGCGGCgGGCACcgACGCCGGCGa--- -3'
miRNA:   3'- -CGCCGgCUGUGcaUGCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 94867 0.73 0.561168
Target:  5'- -aGGCCGACGCccugcuggagGCGCaCGACGUGUUu -3'
miRNA:   3'- cgCCGGCUGUGca--------UGCG-GCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 76243 0.72 0.59149
Target:  5'- -gGGCCGACGCGcgGCGCgCGAUcgGa- -3'
miRNA:   3'- cgCCGGCUGUGCa-UGCG-GCUGuaCaa -5'
5658 5' -55.9 NC_001806.1 + 3465 0.72 0.632296
Target:  5'- cGCGGCCGGCcuggGCGcgGCGCCcGGCGUcGUc -3'
miRNA:   3'- -CGCCGGCUG----UGCa-UGCGG-CUGUA-CAa -5'
5658 5' -55.9 NC_001806.1 + 76485 0.72 0.632296
Target:  5'- cUGGCCGAUACcaaggACGCCGugGUGc- -3'
miRNA:   3'- cGCCGGCUGUGca---UGCGGCugUACaa -5'
5658 5' -55.9 NC_001806.1 + 148116 0.71 0.683234
Target:  5'- cGCGGCCGGCugGgGgGCUG-CGUGa- -3'
miRNA:   3'- -CGCCGGCUGugCaUgCGGCuGUACaa -5'
5658 5' -55.9 NC_001806.1 + 134832 0.71 0.69333
Target:  5'- cGCGGCUGGCG-GU-CGCCGACcUGg- -3'
miRNA:   3'- -CGCCGGCUGUgCAuGCGGCUGuACaa -5'
5658 5' -55.9 NC_001806.1 + 40299 0.7 0.723275
Target:  5'- aCGGCCuGAUAUu--CGCCGGCGUGUUc -3'
miRNA:   3'- cGCCGG-CUGUGcauGCGGCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 6730 0.7 0.733113
Target:  5'- -gGGCCcaGgACGUACGCCGACGUa-- -3'
miRNA:   3'- cgCCGGc-UgUGCAUGCGGCUGUAcaa -5'
5658 5' -55.9 NC_001806.1 + 52522 0.7 0.733113
Target:  5'- uGCGGCuCGugGCGUcuCGCCggacGACGUGg- -3'
miRNA:   3'- -CGCCG-GCugUGCAu-GCGG----CUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 98541 0.7 0.742863
Target:  5'- --cGCCGACGCcaACGCCGcCAUGUUu -3'
miRNA:   3'- cgcCGGCUGUGcaUGCGGCuGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 89603 0.69 0.752517
Target:  5'- gGCGGCCGACaggagagugACGUA-GCCGguggGCGUGg- -3'
miRNA:   3'- -CGCCGGCUG---------UGCAUgCGGC----UGUACaa -5'
5658 5' -55.9 NC_001806.1 + 43418 0.69 0.762065
Target:  5'- uUGGCCcGCACGUaccACGCCuGCAUGg- -3'
miRNA:   3'- cGCCGGcUGUGCA---UGCGGcUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 20099 0.69 0.775238
Target:  5'- cGUGGCCGGCGcCGUcugcgggcgucggucGCGCCGGgccuuUAUGUg -3'
miRNA:   3'- -CGCCGGCUGU-GCA---------------UGCGGCU-----GUACAa -5'
5658 5' -55.9 NC_001806.1 + 81358 0.69 0.780808
Target:  5'- gGCGGCCGGgGCGU-CGCCcGCGa--- -3'
miRNA:   3'- -CGCCGGCUgUGCAuGCGGcUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 47145 0.69 0.789984
Target:  5'- uUGGUCGACGagcUGUuuGCCGACAUGa- -3'
miRNA:   3'- cGCCGGCUGU---GCAugCGGCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 125855 0.69 0.789984
Target:  5'- cCGGCCGcCGCGgACGCCGugGc--- -3'
miRNA:   3'- cGCCGGCuGUGCaUGCGGCugUacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.