miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 5' -55.9 NC_001806.1 + 51789 0.67 0.865199
Target:  5'- cGgGGCCGugGCGgccaagUACGCCGccacCGUGg- -3'
miRNA:   3'- -CgCCGGCugUGC------AUGCGGCu---GUACaa -5'
5658 5' -55.9 NC_001806.1 + 62968 0.67 0.857589
Target:  5'- aGCGGCCGGCGCGauacaugcUGCGCUuaaaGUGg- -3'
miRNA:   3'- -CGCCGGCUGUGC--------AUGCGGcug-UACaa -5'
5658 5' -55.9 NC_001806.1 + 51290 0.67 0.849776
Target:  5'- uGCGGCUGGCGCGgUGC-CUGACGc--- -3'
miRNA:   3'- -CGCCGGCUGUGC-AUGcGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 118251 0.67 0.849776
Target:  5'- -aGGCCGugGCGUuuguguGCGUcaccacccuCGGCAUGUg -3'
miRNA:   3'- cgCCGGCugUGCA------UGCG---------GCUGUACAa -5'
5658 5' -55.9 NC_001806.1 + 103938 0.68 0.833567
Target:  5'- cGCGGCUGACGCGgagcguccgUugGgCGACAa--- -3'
miRNA:   3'- -CGCCGGCUGUGC---------AugCgGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 21739 0.68 0.825184
Target:  5'- cGCGGCCGAcCACGcACGCgaGGCGc--- -3'
miRNA:   3'- -CGCCGGCU-GUGCaUGCGg-CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 3004 0.68 0.825184
Target:  5'- gGCGGCCGccaGCGCGU-CGgCGGCGUc-- -3'
miRNA:   3'- -CGCCGGC---UGUGCAuGCgGCUGUAcaa -5'
5658 5' -55.9 NC_001806.1 + 43588 0.68 0.841767
Target:  5'- gGCGGCUGACAaGUcCGCgGAUGUGc- -3'
miRNA:   3'- -CGCCGGCUGUgCAuGCGgCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 43418 0.69 0.762065
Target:  5'- uUGGCCcGCACGUaccACGCCuGCAUGg- -3'
miRNA:   3'- cGCCGGcUGUGCA---UGCGGcUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 89603 0.69 0.752517
Target:  5'- gGCGGCCGACaggagagugACGUA-GCCGguggGCGUGg- -3'
miRNA:   3'- -CGCCGGCUG---------UGCAUgCGGC----UGUACaa -5'
5658 5' -55.9 NC_001806.1 + 20099 0.69 0.775238
Target:  5'- cGUGGCCGGCGcCGUcugcgggcgucggucGCGCCGGgccuuUAUGUg -3'
miRNA:   3'- -CGCCGGCUGU-GCA---------------UGCGGCU-----GUACAa -5'
5658 5' -55.9 NC_001806.1 + 81358 0.69 0.780808
Target:  5'- gGCGGCCGGgGCGU-CGCCcGCGa--- -3'
miRNA:   3'- -CGCCGGCUgUGCAuGCGGcUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 47145 0.69 0.789984
Target:  5'- uUGGUCGACGagcUGUuuGCCGACAUGa- -3'
miRNA:   3'- cGCCGGCUGU---GCAugCGGCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 125855 0.69 0.789984
Target:  5'- cCGGCCGcCGCGgACGCCGugGc--- -3'
miRNA:   3'- cGCCGGCuGUGCaUGCGGCugUacaa -5'
5658 5' -55.9 NC_001806.1 + 98541 0.7 0.742863
Target:  5'- --cGCCGACGCcaACGCCGcCAUGUUu -3'
miRNA:   3'- cgcCGGCUGUGcaUGCGGCuGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 52522 0.7 0.733113
Target:  5'- uGCGGCuCGugGCGUcuCGCCggacGACGUGg- -3'
miRNA:   3'- -CGCCG-GCugUGCAu-GCGG----CUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 6730 0.7 0.733113
Target:  5'- -gGGCCcaGgACGUACGCCGACGUa-- -3'
miRNA:   3'- cgCCGGc-UgUGCAUGCGGCUGUAcaa -5'
5658 5' -55.9 NC_001806.1 + 40299 0.7 0.723275
Target:  5'- aCGGCCuGAUAUu--CGCCGGCGUGUUc -3'
miRNA:   3'- cGCCGG-CUGUGcauGCGGCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 134832 0.71 0.69333
Target:  5'- cGCGGCUGGCG-GU-CGCCGACcUGg- -3'
miRNA:   3'- -CGCCGGCUGUgCAuGCGGCUGuACaa -5'
5658 5' -55.9 NC_001806.1 + 148116 0.71 0.683234
Target:  5'- cGCGGCCGGCugGgGgGCUG-CGUGa- -3'
miRNA:   3'- -CGCCGGCUGugCaUgCGGCuGUACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.