miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5662 3' -50 NC_001806.1 + 71511 0.66 0.997264
Target:  5'- --uGUUCUcgguguuauggUGUGCGGGCgggCgGGGGGGg -3'
miRNA:   3'- cuuCAAGA-----------ACGUGUUUGa--GgUCCCCC- -5'
5662 3' -50 NC_001806.1 + 10277 0.66 0.997264
Target:  5'- aGAcGUUCgUGCugAAcguCUCCccGGGGGa -3'
miRNA:   3'- -CUuCAAGaACGugUUu--GAGGu-CCCCC- -5'
5662 3' -50 NC_001806.1 + 30401 0.66 0.996759
Target:  5'- -cGGUg---GCGCGcGGCUCgGGGGGGc -3'
miRNA:   3'- cuUCAagaaCGUGU-UUGAGgUCCCCC- -5'
5662 3' -50 NC_001806.1 + 64973 0.67 0.993915
Target:  5'- cGggGgUCccgGgGCAAACaUCCAGGGGc -3'
miRNA:   3'- -CuuCaAGaa-CgUGUUUG-AGGUCCCCc -5'
5662 3' -50 NC_001806.1 + 95417 0.67 0.993915
Target:  5'- cGAAGaccgUCgc-CGCGGGC-CCGGGGGGc -3'
miRNA:   3'- -CUUCa---AGaacGUGUUUGaGGUCCCCC- -5'
5662 3' -50 NC_001806.1 + 29975 0.67 0.993915
Target:  5'- gGggGgcgUCUgGC-Cc--CUCCGGGGGGg -3'
miRNA:   3'- -CuuCa--AGAaCGuGuuuGAGGUCCCCC- -5'
5662 3' -50 NC_001806.1 + 104016 0.67 0.993915
Target:  5'- cGAGGgaC-UGCAgGAGCUUCAGGGa- -3'
miRNA:   3'- -CUUCaaGaACGUgUUUGAGGUCCCcc -5'
5662 3' -50 NC_001806.1 + 12952 0.68 0.985696
Target:  5'- cGAGUUCUggcUGCgugGCGuuggggucucggacAGCUCCGGGGGc -3'
miRNA:   3'- cUUCAAGA---ACG---UGU--------------UUGAGGUCCCCc -5'
5662 3' -50 NC_001806.1 + 90324 0.68 0.984417
Target:  5'- uGGGUUCUcGCACGAcgggGCUC--GGGGGu -3'
miRNA:   3'- cUUCAAGAaCGUGUU----UGAGguCCCCC- -5'
5662 3' -50 NC_001806.1 + 141837 0.69 0.972621
Target:  5'- aGggGUUCgccaGCuCAGGCUCCaucAGGGGc -3'
miRNA:   3'- -CuuCAAGaa--CGuGUUUGAGG---UCCCCc -5'
5662 3' -50 NC_001806.1 + 89069 0.7 0.952964
Target:  5'- uGAGGUgaccgUCgUGCACcccggcgcgcuuCUCCGGGGGGg -3'
miRNA:   3'- -CUUCA-----AGaACGUGuuu---------GAGGUCCCCC- -5'
5662 3' -50 NC_001806.1 + 19498 0.7 0.946858
Target:  5'- gGAAGggcgCUUGCGCuuGCgcgugcCCAGGGGcGg -3'
miRNA:   3'- -CUUCaa--GAACGUGuuUGa-----GGUCCCC-C- -5'
5662 3' -50 NC_001806.1 + 64788 0.71 0.926631
Target:  5'- --cGUUCUcggGCGUGAGUUCCAGGGGGa -3'
miRNA:   3'- cuuCAAGAa--CGUGUUUGAGGUCCCCC- -5'
5662 3' -50 NC_001806.1 + 74796 1.11 0.007714
Target:  5'- aGAAGUUCUUGCACAAACUCCAGGGGGu -3'
miRNA:   3'- -CUUCAAGAACGUGUUUGAGGUCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.