miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 3' -51.8 NC_001806.1 + 102936 0.66 0.982263
Target:  5'- --cUCCAUCUCCGcgacGGCcAGACCCg -3'
miRNA:   3'- uuuAGGUGGGGGUuu--CCGuUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 96540 0.66 0.982263
Target:  5'- ---cCCGCCCCU---GGCGcccCCCCa -3'
miRNA:   3'- uuuaGGUGGGGGuuuCCGUuuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 112334 0.66 0.982263
Target:  5'- ---gCCACCgCCgGGAGGCcgucGAGGCCUg -3'
miRNA:   3'- uuuaGGUGG-GGgUUUCCG----UUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 152005 0.66 0.982263
Target:  5'- ---cCCGCUCCCGc-GGCcccGCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGUuuCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 136830 0.66 0.982263
Target:  5'- ----aCACCCCCu--GGCccucgguauACCCCa -3'
miRNA:   3'- uuuagGUGGGGGuuuCCGuuu------UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 15562 0.66 0.982263
Target:  5'- ---aCCGCCCCCAGgGGGCGGucAUUUCu -3'
miRNA:   3'- uuuaGGUGGGGGUU-UCCGUUu-UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 101077 0.66 0.982263
Target:  5'- --cUCCAgCUgCAcgcAGGCGAucAGCCCCa -3'
miRNA:   3'- uuuAGGUgGGgGUu--UCCGUU--UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 150078 0.66 0.981633
Target:  5'- ---gCCGCgcgUCCCAgggGAGGCAGgcccaccgcggggcGGCCCCg -3'
miRNA:   3'- uuuaGGUG---GGGGU---UUCCGUU--------------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 59293 0.66 0.980098
Target:  5'- uAAAUaCGCCCCCAGcucguuAGGCcacACCCUu -3'
miRNA:   3'- -UUUAgGUGGGGGUU------UCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 33415 0.66 0.980098
Target:  5'- ---aCCACCCgCGAucGGCAcggccgcGCCCCc -3'
miRNA:   3'- uuuaGGUGGGgGUUu-CCGUuu-----UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 70153 0.66 0.980098
Target:  5'- ---aCCGgCCgCCcGGGGCGGccucGGCCCCa -3'
miRNA:   3'- uuuaGGUgGG-GGuUUCCGUU----UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 23595 0.66 0.980098
Target:  5'- ---gCCGCCgCCCuGGAGGCcuacugcuCCCCg -3'
miRNA:   3'- uuuaGGUGG-GGG-UUUCCGuuuu----GGGG- -5'
5664 3' -51.8 NC_001806.1 + 32977 0.66 0.980098
Target:  5'- uGGGUCCGCCggggCCCc-GGGCcGGGCCgCCa -3'
miRNA:   3'- -UUUAGGUGG----GGGuuUCCGuUUUGG-GG- -5'
5664 3' -51.8 NC_001806.1 + 62689 0.66 0.980098
Target:  5'- ---aUCACCUCCAgGAGGCGcu-UCCCg -3'
miRNA:   3'- uuuaGGUGGGGGU-UUCCGUuuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2713 0.66 0.980098
Target:  5'- ---gCCAgCCgCCCAGGGGguCGGGGCCCUc -3'
miRNA:   3'- uuuaGGU-GG-GGGUUUCC--GUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 12322 0.66 0.980098
Target:  5'- --cUCCACUacgCCGucGGGCcccAAGGCCCCg -3'
miRNA:   3'- uuuAGGUGGg--GGUu-UCCG---UUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 78516 0.66 0.979872
Target:  5'- gGAAUCUgggcagacgcugaGCCCCuCGggggggcgcGAGGCGucACCCCc -3'
miRNA:   3'- -UUUAGG-------------UGGGG-GU---------UUCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2449 0.66 0.977743
Target:  5'- aGAggCgGCCCCC---GGCG--GCCCCg -3'
miRNA:   3'- -UUuaGgUGGGGGuuuCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 83006 0.66 0.977743
Target:  5'- ---cCCGCCCagCCAu-GGCAAcuucGCCCCc -3'
miRNA:   3'- uuuaGGUGGG--GGUuuCCGUUu---UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 19152 0.66 0.977743
Target:  5'- ---cCCGCCCCaucuuAGGaaaaauAACCCCa -3'
miRNA:   3'- uuuaGGUGGGGguu--UCCguu---UUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.