miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 5' -62.6 NC_001806.1 + 30232 0.67 0.616066
Target:  5'- gCCGUGG-CCCCgugcgugcgagcgccGCCUCCGgggcCCGGc- -3'
miRNA:   3'- -GGCGCCaGGGG---------------CGGAGGCaa--GGCCuc -5'
5664 5' -62.6 NC_001806.1 + 52554 0.67 0.612227
Target:  5'- uCCGCGGggccUCCCCcggacgacaugGCCagCGgcCCGGGGg -3'
miRNA:   3'- -GGCGCC----AGGGG-----------CGGagGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 50917 0.67 0.612227
Target:  5'- aCGUGGaucugcgCCCCGCCUCCucagcgccCCGGGc -3'
miRNA:   3'- gGCGCCa------GGGGCGGAGGcaa-----GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 136380 0.67 0.602639
Target:  5'- uCCGCGGcCUCCGCgaCCGUggccagCUGGcGGg -3'
miRNA:   3'- -GGCGCCaGGGGCGgaGGCAa-----GGCC-UC- -5'
5664 5' -62.6 NC_001806.1 + 44448 0.67 0.602639
Target:  5'- gCCGCGGgCCCgGCgUCCGcguggagcaUgCGGAGg -3'
miRNA:   3'- -GGCGCCaGGGgCGgAGGCa--------AgGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 21419 0.67 0.59307
Target:  5'- cCCGCGG-CCUCGCCgCC---CCGGAc -3'
miRNA:   3'- -GGCGCCaGGGGCGGaGGcaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 94494 0.67 0.59307
Target:  5'- gCGCGGcgCCaCCGCCgcgcuggagCgCGUUCgGGAGu -3'
miRNA:   3'- gGCGCCa-GG-GGCGGa--------G-GCAAGgCCUC- -5'
5664 5' -62.6 NC_001806.1 + 21057 0.67 0.59307
Target:  5'- aCCGUGcuacGUCCgCCGUCgcagCCGUauccCCGGAGg -3'
miRNA:   3'- -GGCGC----CAGG-GGCGGa---GGCAa---GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 115818 0.67 0.59307
Target:  5'- cCCGCccccuuuGUCCCCGCCgacaagCCGcgaUUCCGaGGGc -3'
miRNA:   3'- -GGCGc------CAGGGGCGGa-----GGC---AAGGC-CUC- -5'
5664 5' -62.6 NC_001806.1 + 22615 0.67 0.583527
Target:  5'- gCCGCcGUCgCCGCCgCCGcaCCGGGc -3'
miRNA:   3'- -GGCGcCAGgGGCGGaGGCaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 27864 0.67 0.583527
Target:  5'- cCCGCGGUgggCCUGCCUCCc--CUGGGa -3'
miRNA:   3'- -GGCGCCAg--GGGCGGAGGcaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 120890 0.68 0.574014
Target:  5'- cCCGgGGaccuugCCCCgGCCggauucCCGggCCGGAGc -3'
miRNA:   3'- -GGCgCCa-----GGGG-CGGa-----GGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 71122 0.68 0.562648
Target:  5'- aCCGCGGUUCCgGaCUCCGUggaucugucucgCCaGGGGc -3'
miRNA:   3'- -GGCGCCAGGGgCgGAGGCAa-----------GG-CCUC- -5'
5664 5' -62.6 NC_001806.1 + 2670 0.68 0.555103
Target:  5'- gCCGCGGgCgCCGCCguguggCUGggccCCGGGGg -3'
miRNA:   3'- -GGCGCCaGgGGCGGa-----GGCaa--GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 144835 0.68 0.555103
Target:  5'- gCgGCGGUCCggGCC-CCG-UCCGGAc -3'
miRNA:   3'- -GgCGCCAGGggCGGaGGCaAGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 43686 0.68 0.545715
Target:  5'- cCCuuGGccUCUCCGCCUUCGggguugCCGGGGg -3'
miRNA:   3'- -GGcgCC--AGGGGCGGAGGCaa----GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 23252 0.68 0.545715
Target:  5'- -gGCGGccgCCgCCGCCUCCGccgcgCCGcGGGa -3'
miRNA:   3'- ggCGCCa--GG-GGCGGAGGCaa---GGC-CUC- -5'
5664 5' -62.6 NC_001806.1 + 91177 0.68 0.536379
Target:  5'- gCCGCGG-CCCgCGCCaacgCCGU--CGGGGc -3'
miRNA:   3'- -GGCGCCaGGG-GCGGa---GGCAagGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 7580 0.68 0.536379
Target:  5'- aCCGCGGUUCgCGUC-CCGcccaCCGGAa -3'
miRNA:   3'- -GGCGCCAGGgGCGGaGGCaa--GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 85742 0.68 0.536379
Target:  5'- cCUGCGGUCCggagCCGCgCggccaCGUcgUCCGGGGg -3'
miRNA:   3'- -GGCGCCAGG----GGCG-Gag---GCA--AGGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.