miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 3' -55.1 NC_001806.1 + 71339 0.66 0.907432
Target:  5'- -cGGAGGCcuauggGCAcgGCCCaCGC-CAgGCg -3'
miRNA:   3'- gaCCUCUG------UGUuaCGGG-GCGuGUgUG- -5'
5666 3' -55.1 NC_001806.1 + 70393 0.66 0.906808
Target:  5'- aCUGGAgGACGCcaucGUGCUgcugcggCUGCACAUGCg -3'
miRNA:   3'- -GACCU-CUGUGu---UACGG-------GGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 148710 0.66 0.901088
Target:  5'- gUGG-GGCGCGAUcucaUCCGUGCACACg -3'
miRNA:   3'- gACCuCUGUGUUAcg--GGGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 138063 0.66 0.901088
Target:  5'- gCUGGAG-UACGGccUGCCCaucaccgaggaGCACAUGCa -3'
miRNA:   3'- -GACCUCuGUGUU--ACGGGg----------CGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 41377 0.67 0.894505
Target:  5'- -aGGGGGCaucACGggGCCCUGgGCGCGg -3'
miRNA:   3'- gaCCUCUG---UGUuaCGGGGCgUGUGUg -5'
5666 3' -55.1 NC_001806.1 + 76409 0.67 0.892484
Target:  5'- gCUGGAG-CGCGuggaccagaGCCCCGUgaaggacacggcguACGCGCa -3'
miRNA:   3'- -GACCUCuGUGUua-------CGGGGCG--------------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 30296 0.67 0.887686
Target:  5'- -cGGAGccggcCGCcc-GCCCCGCGgACGCg -3'
miRNA:   3'- gaCCUCu----GUGuuaCGGGGCGUgUGUG- -5'
5666 3' -55.1 NC_001806.1 + 109949 0.67 0.886991
Target:  5'- gCUGcGAGGCACAcgGCCgCCcCACggaauaaACACa -3'
miRNA:   3'- -GAC-CUCUGUGUuaCGG-GGcGUG-------UGUG- -5'
5666 3' -55.1 NC_001806.1 + 22922 0.67 0.885595
Target:  5'- -cGGAGGgaccCGCGG-GCCCCGCuuccccgccgcgccGCACGCc -3'
miRNA:   3'- gaCCUCU----GUGUUaCGGGGCG--------------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 147748 0.67 0.880634
Target:  5'- -cGGGGGCGCGcggGUCCCGaCGCGgcCGCg -3'
miRNA:   3'- gaCCUCUGUGUua-CGGGGC-GUGU--GUG- -5'
5666 3' -55.1 NC_001806.1 + 78884 0.67 0.880634
Target:  5'- uCUGGcGGCACA--GCuCCCGCGCcuguccGCGCu -3'
miRNA:   3'- -GACCuCUGUGUuaCG-GGGCGUG------UGUG- -5'
5666 3' -55.1 NC_001806.1 + 117017 0.67 0.873354
Target:  5'- -cGGAGACAUg--GCCCCcGuUAUACGCu -3'
miRNA:   3'- gaCCUCUGUGuuaCGGGG-C-GUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 3115 0.67 0.865852
Target:  5'- -cGGcAGGCGCGG-GUCCCGCGgcaGCGCg -3'
miRNA:   3'- gaCC-UCUGUGUUaCGGGGCGUg--UGUG- -5'
5666 3' -55.1 NC_001806.1 + 62479 0.67 0.863559
Target:  5'- gUGGAGGCugGGaggGUCCCGUccgccuucuccgugACAUACa -3'
miRNA:   3'- gACCUCUGugUUa--CGGGGCG--------------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 151156 0.68 0.858133
Target:  5'- -aGGcgcAGGCGCGccagGUGCUCCGCggugACGCGCa -3'
miRNA:   3'- gaCC---UCUGUGU----UACGGGGCG----UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 22568 0.68 0.858133
Target:  5'- -cGGGGGcCGCGGggaGCCCCGgCGCcgGCGCa -3'
miRNA:   3'- gaCCUCU-GUGUUa--CGGGGC-GUG--UGUG- -5'
5666 3' -55.1 NC_001806.1 + 1607 0.68 0.857349
Target:  5'- -cGGGccgcagcGGCGCGcccagGCCCCaGCGCGCGCa -3'
miRNA:   3'- gaCCU-------CUGUGUua---CGGGG-CGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 62999 0.68 0.850203
Target:  5'- gUGGuugaAGGgACGG-GCCCCGCgaACGCACa -3'
miRNA:   3'- gACC----UCUgUGUUaCGGGGCG--UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 54721 0.68 0.850203
Target:  5'- -cGGGGACGCAGccgGCCgUGCAgACcACa -3'
miRNA:   3'- gaCCUCUGUGUUa--CGGgGCGUgUG-UG- -5'
5666 3' -55.1 NC_001806.1 + 45289 0.68 0.850203
Target:  5'- -gGGAGACGCg--GgCCCGCGCGgGg -3'
miRNA:   3'- gaCCUCUGUGuuaCgGGGCGUGUgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.