miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 5' -68.2 NC_001806.1 + 29536 0.67 0.343881
Target:  5'- gGGCacaCGgugaGGGCCCUGuCGCCCaCCc-- -3'
miRNA:   3'- gCCGg--GCa---CCCGGGAC-GCGGG-GGaca -5'
5666 5' -68.2 NC_001806.1 + 79550 0.67 0.337505
Target:  5'- gGcGCCCGUGGGCCCccgcgacgacuuccgGCGCuugccguccCCCCa-- -3'
miRNA:   3'- gC-CGGGCACCCGGGa--------------CGCG---------GGGGaca -5'
5666 5' -68.2 NC_001806.1 + 5897 0.67 0.3361
Target:  5'- gCGGCCCaaGGGCCgcccgccUUGcCGCCCCCc-- -3'
miRNA:   3'- -GCCGGGcaCCCGG-------GAC-GCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 3671 0.67 0.32983
Target:  5'- cCGGCgCCG-GGGCUCcccGCgGCCCCCg-- -3'
miRNA:   3'- -GCCG-GGCaCCCGGGa--CG-CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 143430 0.67 0.32983
Target:  5'- gCGGCCC---GGCCC-GCGCUCCCa-- -3'
miRNA:   3'- -GCCGGGcacCCGGGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 42371 0.67 0.32983
Target:  5'- uGGCCugcaggucguaCGUGGcCCCcGCGCCCCCc-- -3'
miRNA:   3'- gCCGG-----------GCACCcGGGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 53258 0.67 0.322965
Target:  5'- cCGGgCCGcaccGGGCCCc-CGCCCCCg-- -3'
miRNA:   3'- -GCCgGGCa---CCCGGGacGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 26686 0.67 0.322965
Target:  5'- cCGGCCCccaccgcccggcGUGGGCCCgggggGCGgggcugaCCCCUc- -3'
miRNA:   3'- -GCCGGG------------CACCCGGGa----CGCg------GGGGAca -5'
5666 5' -68.2 NC_001806.1 + 24038 0.67 0.316207
Target:  5'- aCGGCCgCcUGGGCgggcaauuggaCCgGCGCCCCCg-- -3'
miRNA:   3'- -GCCGG-GcACCCG-----------GGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 55787 0.67 0.312204
Target:  5'- gCGGUgaUCGUGGGCCCgGUggaggcaguuuccgaGCCCCCg-- -3'
miRNA:   3'- -GCCG--GGCACCCGGGaCG---------------CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 22664 0.67 0.309556
Target:  5'- aCGGCgCCGcgGGGaUCCU-CGCCgCCCUGg -3'
miRNA:   3'- -GCCG-GGCa-CCC-GGGAcGCGG-GGGACa -5'
5666 5' -68.2 NC_001806.1 + 150113 0.67 0.303013
Target:  5'- gCGGcCCCGUccccGGGgaccaaCCCgGCGCCCCCa-- -3'
miRNA:   3'- -GCC-GGGCA----CCC------GGGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 66826 0.67 0.303013
Target:  5'- cCGGCCCGgGuGGCCggugUGCGCCgccUCCUGg -3'
miRNA:   3'- -GCCGGGCaC-CCGGg---ACGCGG---GGGACa -5'
5666 5' -68.2 NC_001806.1 + 133510 0.67 0.302364
Target:  5'- aCGGCCCG-GGGCcuuauggaggacgCCUGCGaCCgCCUu- -3'
miRNA:   3'- -GCCGGGCaCCCG-------------GGACGC-GGgGGAca -5'
5666 5' -68.2 NC_001806.1 + 145006 0.67 0.301717
Target:  5'- cCGGCCCG-GGGCCCcacaacggcccgGCGCaugCgCUGUg -3'
miRNA:   3'- -GCCGGGCaCCCGGGa-----------CGCGg--GgGACA- -5'
5666 5' -68.2 NC_001806.1 + 65461 0.68 0.296576
Target:  5'- gCGGCCCccGGGUCCUggggGCGCCCgCg-- -3'
miRNA:   3'- -GCCGGGcaCCCGGGA----CGCGGGgGaca -5'
5666 5' -68.2 NC_001806.1 + 23377 0.68 0.290246
Target:  5'- cCGGCUCGgacGCCC-GCGCCCCCc-- -3'
miRNA:   3'- -GCCGGGCaccCGGGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 65629 0.68 0.290246
Target:  5'- uGGCCgUGggcgagagGGGCCCcgGCGgccuCCCCCUGg -3'
miRNA:   3'- gCCGG-GCa-------CCCGGGa-CGC----GGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 13017 0.68 0.290246
Target:  5'- gGGCCU-UGGGCCC-GUGCCaCCCg-- -3'
miRNA:   3'- gCCGGGcACCCGGGaCGCGG-GGGaca -5'
5666 5' -68.2 NC_001806.1 + 23310 0.68 0.2865
Target:  5'- cCGGCCCGgccgcccggaggcgGcGGCCC-GCGaCCCCCg-- -3'
miRNA:   3'- -GCCGGGCa-------------C-CCGGGaCGC-GGGGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.