miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5669 3' -57.4 NC_001806.1 + 16246 0.66 0.884698
Target:  5'- -gGGAGGaccagacaCGUGACcCCGGAGACGa -3'
miRNA:   3'- gaCCUCCag------GCGCUGcGGCCUUUGUc -5'
5669 3' -57.4 NC_001806.1 + 136967 0.66 0.884698
Target:  5'- gUGGGGGcCCGCGAgCGUggugCGGucauGGCGGc -3'
miRNA:   3'- gACCUCCaGGCGCU-GCG----GCCu---UUGUC- -5'
5669 3' -57.4 NC_001806.1 + 31696 0.66 0.877776
Target:  5'- gUGGGGGUgCGUGggaguggggguGCGUgGGAGugGGg -3'
miRNA:   3'- gACCUCCAgGCGC-----------UGCGgCCUUugUC- -5'
5669 3' -57.4 NC_001806.1 + 31600 0.66 0.877776
Target:  5'- gUGGGGGUgCGUGggaguggggguGCGUgGGAGugGGg -3'
miRNA:   3'- gACCUCCAgGCGC-----------UGCGgCCUUugUC- -5'
5669 3' -57.4 NC_001806.1 + 31648 0.66 0.877776
Target:  5'- gUGGGGGUgCGUGggaguggggguGCGUgGGAGugGGg -3'
miRNA:   3'- gACCUCCAgGCGC-----------UGCGgCCUUugUC- -5'
5669 3' -57.4 NC_001806.1 + 67996 0.66 0.877072
Target:  5'- cCUGGAGGgCCGCGGgggaucgauaauuCGCCGcucccuACAGc -3'
miRNA:   3'- -GACCUCCaGGCGCU-------------GCGGCcuu---UGUC- -5'
5669 3' -57.4 NC_001806.1 + 40574 0.66 0.876366
Target:  5'- aUGGAagcgccgcgGGUCgGCGugcgcggcgacaaACGCCGGAAcgucuuuGCAGg -3'
miRNA:   3'- gACCU---------CCAGgCGC-------------UGCGGCCUU-------UGUC- -5'
5669 3' -57.4 NC_001806.1 + 147782 0.66 0.870642
Target:  5'- -cGGGGGgCC-CGGgGCgGGggGCGGa -3'
miRNA:   3'- gaCCUCCaGGcGCUgCGgCCuuUGUC- -5'
5669 3' -57.4 NC_001806.1 + 117365 0.66 0.870642
Target:  5'- -cGGAGGUCCGgccUGG-GCCGcGAggUAGa -3'
miRNA:   3'- gaCCUCCAGGC---GCUgCGGC-CUuuGUC- -5'
5669 3' -57.4 NC_001806.1 + 128582 0.66 0.870642
Target:  5'- -gGGAGGUCa-CGGCGCCGaccACGGc -3'
miRNA:   3'- gaCCUCCAGgcGCUGCGGCcuuUGUC- -5'
5669 3' -57.4 NC_001806.1 + 34312 0.66 0.870642
Target:  5'- -cGGGGGgCgGCG-CGCCGGA--CGGg -3'
miRNA:   3'- gaCCUCCaGgCGCuGCGGCCUuuGUC- -5'
5669 3' -57.4 NC_001806.1 + 21198 0.66 0.870642
Target:  5'- -gGGGGGcCCucggGUGGgGCgCGGAGACGGa -3'
miRNA:   3'- gaCCUCCaGG----CGCUgCG-GCCUUUGUC- -5'
5669 3' -57.4 NC_001806.1 + 26175 0.66 0.870642
Target:  5'- -gGGAGGagCGgccaGACGCCGaAAACGGg -3'
miRNA:   3'- gaCCUCCagGCg---CUGCGGCcUUUGUC- -5'
5669 3' -57.4 NC_001806.1 + 149423 0.66 0.870642
Target:  5'- -aGGGGGUCCcacgGCGACcCCGGGcccuGCGu -3'
miRNA:   3'- gaCCUCCAGG----CGCUGcGGCCUu---UGUc -5'
5669 3' -57.4 NC_001806.1 + 80245 0.66 0.863301
Target:  5'- gCUGGAGGgCgGUGuuGCGCCcGGAGGCc- -3'
miRNA:   3'- -GACCUCCaGgCGC--UGCGG-CCUUUGuc -5'
5669 3' -57.4 NC_001806.1 + 43293 0.66 0.863301
Target:  5'- -cGGAGGcggagCCGCGGCuGCaGGAGGCc- -3'
miRNA:   3'- gaCCUCCa----GGCGCUG-CGgCCUUUGuc -5'
5669 3' -57.4 NC_001806.1 + 2788 0.66 0.863301
Target:  5'- -cGGcGGcCCGgGGCGCCgcgggcugggcGGggGCGGg -3'
miRNA:   3'- gaCCuCCaGGCgCUGCGG-----------CCuuUGUC- -5'
5669 3' -57.4 NC_001806.1 + 135849 0.66 0.855759
Target:  5'- -gGGAGGguaCCGuCGACGgCCGGGGcgucuauCAGg -3'
miRNA:   3'- gaCCUCCa--GGC-GCUGC-GGCCUUu------GUC- -5'
5669 3' -57.4 NC_001806.1 + 95266 0.66 0.855759
Target:  5'- -aGGAGGcgCUGCGucgcgugcuggcGCGCaUGGggGCGGg -3'
miRNA:   3'- gaCCUCCa-GGCGC------------UGCG-GCCuuUGUC- -5'
5669 3' -57.4 NC_001806.1 + 85987 0.66 0.855759
Target:  5'- -gGGGGGUCgGCaGGCGacggcgucucCCGGggGCGc -3'
miRNA:   3'- gaCCUCCAGgCG-CUGC----------GGCCuuUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.