miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5669 5' -53.2 NC_001806.1 + 132136 0.66 0.97165
Target:  5'- cCCUAUgGCCC-UGGcgGCGCGCGuugccGAGCa -3'
miRNA:   3'- cGGAUA-CGGGuACC--UGCGUGUc----UUCG- -5'
5669 5' -53.2 NC_001806.1 + 30379 0.66 0.97165
Target:  5'- aGUCUGUGCC---GGGCGCgugcgACGGuGGCg -3'
miRNA:   3'- -CGGAUACGGguaCCUGCG-----UGUCuUCG- -5'
5669 5' -53.2 NC_001806.1 + 86799 0.66 0.97165
Target:  5'- cGCCcagcGCgCGUGGACGUacucGCGGucGCg -3'
miRNA:   3'- -CGGaua-CGgGUACCUGCG----UGUCuuCG- -5'
5669 5' -53.2 NC_001806.1 + 130076 0.66 0.97165
Target:  5'- -----gGCUCcgGGGCGCGCucGGAGCc -3'
miRNA:   3'- cggauaCGGGuaCCUGCGUGu-CUUCG- -5'
5669 5' -53.2 NC_001806.1 + 59862 0.66 0.97165
Target:  5'- gGCCcgcacgacgGCCCAggccGGACGgACgaGGAGGCc -3'
miRNA:   3'- -CGGaua------CGGGUa---CCUGCgUG--UCUUCG- -5'
5669 5' -53.2 NC_001806.1 + 63973 0.66 0.97165
Target:  5'- cGCCU-UGUuuGUGGugGCcUGGggGUu -3'
miRNA:   3'- -CGGAuACGggUACCugCGuGUCuuCG- -5'
5669 5' -53.2 NC_001806.1 + 63154 0.66 0.968667
Target:  5'- uGCCgAUuCCCAUGGAC-CGCAGGu-- -3'
miRNA:   3'- -CGGaUAcGGGUACCUGcGUGUCUucg -5'
5669 5' -53.2 NC_001806.1 + 4299 0.66 0.968667
Target:  5'- gGCCgugaagcgGCCCGUGG-CGuCGCGGccGGCc -3'
miRNA:   3'- -CGGaua-----CGGGUACCuGC-GUGUCu-UCG- -5'
5669 5' -53.2 NC_001806.1 + 4335 0.66 0.968667
Target:  5'- cGCCgcgcggGCCCGgcGGCGCucgaugcggcccGCGGAGGCc -3'
miRNA:   3'- -CGGaua---CGGGUacCUGCG------------UGUCUUCG- -5'
5669 5' -53.2 NC_001806.1 + 4114 0.66 0.968667
Target:  5'- uCCUccGCCUcgGG-CGCccccCAGAGGCc -3'
miRNA:   3'- cGGAuaCGGGuaCCuGCGu---GUCUUCG- -5'
5669 5' -53.2 NC_001806.1 + 66824 0.66 0.968667
Target:  5'- gGCCg--GCCCG-GGugGC-CGGuguGCg -3'
miRNA:   3'- -CGGauaCGGGUaCCugCGuGUCuu-CG- -5'
5669 5' -53.2 NC_001806.1 + 26630 0.66 0.968667
Target:  5'- aGCCccccGCCCGagccGGCGC-CAGAGGCc -3'
miRNA:   3'- -CGGaua-CGGGUac--CUGCGuGUCUUCG- -5'
5669 5' -53.2 NC_001806.1 + 118044 0.66 0.968667
Target:  5'- gGCCgcUGUUgGUGGugGUcgAGggGCg -3'
miRNA:   3'- -CGGauACGGgUACCugCGugUCuuCG- -5'
5669 5' -53.2 NC_001806.1 + 101765 0.66 0.968357
Target:  5'- cGCCaggGCgUCGUGGGCGUggauaaccuccccACAGggGUg -3'
miRNA:   3'- -CGGauaCG-GGUACCUGCG-------------UGUCuuCG- -5'
5669 5' -53.2 NC_001806.1 + 23304 0.66 0.965469
Target:  5'- cCCg--GCCCGgcccGGcCGCcCGGAGGCg -3'
miRNA:   3'- cGGauaCGGGUa---CCuGCGuGUCUUCG- -5'
5669 5' -53.2 NC_001806.1 + 93472 0.66 0.965469
Target:  5'- cGCg---GCCCuggaGGugGCGCAcGAGGCc -3'
miRNA:   3'- -CGgauaCGGGua--CCugCGUGU-CUUCG- -5'
5669 5' -53.2 NC_001806.1 + 76769 0.66 0.965469
Target:  5'- cGCCUgguuggaacAUGCCCAgcguaccuuUGaGACGCACccgcuAAGCg -3'
miRNA:   3'- -CGGA---------UACGGGU---------AC-CUGCGUGuc---UUCG- -5'
5669 5' -53.2 NC_001806.1 + 113372 0.66 0.965469
Target:  5'- gGCgCUAUGUCCGgcggcguuccgGGACGC-CcGggGCc -3'
miRNA:   3'- -CG-GAUACGGGUa----------CCUGCGuGuCuuCG- -5'
5669 5' -53.2 NC_001806.1 + 135242 0.66 0.965137
Target:  5'- -----aGCCCGugaUGGGCGCGCcuacccgGGggGCc -3'
miRNA:   3'- cggauaCGGGU---ACCUGCGUG-------UCuuCG- -5'
5669 5' -53.2 NC_001806.1 + 61095 0.66 0.965137
Target:  5'- uCCUAUGCCCGcagaaucUGGACGgACcu-GGUu -3'
miRNA:   3'- cGGAUACGGGU-------ACCUGCgUGucuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.