miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5671 3' -70.3 NC_001806.1 + 34409 0.66 0.34631
Target:  5'- gGCCgGGCCgGgCCGGGcCgGGCCg-GGCCg -3'
miRNA:   3'- -UGG-CCGG-CgGGCCCcG-CCGGagCCGG- -5'
5671 3' -70.3 NC_001806.1 + 72691 0.66 0.34631
Target:  5'- aAUCGGgCGCCCGacgauguauGGGCGGU---GGCCc -3'
miRNA:   3'- -UGGCCgGCGGGC---------CCCGCCGgagCCGG- -5'
5671 3' -70.3 NC_001806.1 + 69662 0.66 0.34561
Target:  5'- uCCGGCCGUgccgaCGGaacaucuGGCGaGCCUgCGGCg -3'
miRNA:   3'- uGGCCGGCGg----GCC-------CCGC-CGGA-GCCGg -5'
5671 3' -70.3 NC_001806.1 + 23464 0.66 0.343515
Target:  5'- cGCCccgGGCCGCCgCGGcGCaGGCCcgcccgcgccccgUGGCCg -3'
miRNA:   3'- -UGG---CCGGCGG-GCCcCG-CCGGa------------GCCGG- -5'
5671 3' -70.3 NC_001806.1 + 101022 0.66 0.342124
Target:  5'- -gCGGCgGCCCGcGGCGcucgaaaaucgcagcGCUggCGGCCg -3'
miRNA:   3'- ugGCCGgCGGGCcCCGC---------------CGGa-GCCGG- -5'
5671 3' -70.3 NC_001806.1 + 86757 0.66 0.340045
Target:  5'- gUCGGCCGCcuCCGGGaaauCGGCCaggagcuguucgaaGGCCg -3'
miRNA:   3'- uGGCCGGCG--GGCCCc---GCCGGag------------CCGG- -5'
5671 3' -70.3 NC_001806.1 + 26699 0.66 0.339354
Target:  5'- cCCGGCguggGCCCGGGG-GGCgg-GGCUg -3'
miRNA:   3'- uGGCCGg---CGGGCCCCgCCGgagCCGG- -5'
5671 3' -70.3 NC_001806.1 + 23270 0.66 0.339354
Target:  5'- cGCCGcGCCGCgggaGGGGCGcaagcgcaagaGUCcCGGCCc -3'
miRNA:   3'- -UGGC-CGGCGgg--CCCCGC-----------CGGaGCCGG- -5'
5671 3' -70.3 NC_001806.1 + 23054 0.66 0.339354
Target:  5'- gGCCGGCgGCagCGaGGCcGCCgUGGCCg -3'
miRNA:   3'- -UGGCCGgCGg-GCcCCGcCGGaGCCGG- -5'
5671 3' -70.3 NC_001806.1 + 95539 0.66 0.339354
Target:  5'- cGuuGGCCaGCCUGGGGCGcuGCgUCcGCg -3'
miRNA:   3'- -UggCCGG-CGGGCCCCGC--CGgAGcCGg -5'
5671 3' -70.3 NC_001806.1 + 37903 0.66 0.338664
Target:  5'- uGCCGcGCCacGCCUcgccaugGGGGC-GCCggGGCCg -3'
miRNA:   3'- -UGGC-CGG--CGGG-------CCCCGcCGGagCCGG- -5'
5671 3' -70.3 NC_001806.1 + 51576 0.66 0.337975
Target:  5'- uUCGGCCGCCacccaggcgcuGGGCGagguggagcuGCCcggCGGCCa -3'
miRNA:   3'- uGGCCGGCGGgc---------CCCGC----------CGGa--GCCGG- -5'
5671 3' -70.3 NC_001806.1 + 56655 0.66 0.3366
Target:  5'- gGCCGGCgGCCCGugggaucguuGGGgGGUCgggggggacgggGGCCc -3'
miRNA:   3'- -UGGCCGgCGGGC----------CCCgCCGGag----------CCGG- -5'
5671 3' -70.3 NC_001806.1 + 43279 0.66 0.3325
Target:  5'- gGCCGuuCCGCCCucGGaGGCGgaGCCgCGGCUg -3'
miRNA:   3'- -UGGCc-GGCGGG--CC-CCGC--CGGaGCCGG- -5'
5671 3' -70.3 NC_001806.1 + 109533 0.66 0.3325
Target:  5'- aGCuCGGgaGCCgGGGGagguGcGCCUgGGCCa -3'
miRNA:   3'- -UG-GCCggCGGgCCCCg---C-CGGAgCCGG- -5'
5671 3' -70.3 NC_001806.1 + 139115 0.66 0.3325
Target:  5'- gACCGGCuCGCCgCGcGGGgGGCUgauguccgUCGcCCu -3'
miRNA:   3'- -UGGCCG-GCGG-GC-CCCgCCGG--------AGCcGG- -5'
5671 3' -70.3 NC_001806.1 + 74352 0.66 0.3325
Target:  5'- cGCUGGaCGCCCccgaGGaccuGGCGGCCU-GGCUc -3'
miRNA:   3'- -UGGCCgGCGGG----CC----CCGCCGGAgCCGG- -5'
5671 3' -70.3 NC_001806.1 + 38128 0.66 0.3325
Target:  5'- cCCGuGCUGCUCGGGGgagcaagaCGGUCgccgGGCCc -3'
miRNA:   3'- uGGC-CGGCGGGCCCC--------GCCGGag--CCGG- -5'
5671 3' -70.3 NC_001806.1 + 89762 0.66 0.3325
Target:  5'- cACCGGCugaugaCGCgCGGGGCgugggaggGGCUggggCGGaCCg -3'
miRNA:   3'- -UGGCCG------GCGgGCCCCG--------CCGGa---GCC-GG- -5'
5671 3' -70.3 NC_001806.1 + 24610 0.66 0.328436
Target:  5'- cUCGcacGCCGCCUGcgcgcgcuggggccuGGGCGcGCCgcugCGGCCc -3'
miRNA:   3'- uGGC---CGGCGGGC---------------CCCGC-CGGa---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.