miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5671 5' -54.5 NC_001806.1 + 151284 0.66 0.926416
Target:  5'- -gGGCCGGgGcCGgGGGGCGGCgGCg -3'
miRNA:   3'- uaCCGGCUgUuGUaUCUCGUCGaCGa -5'
5671 5' -54.5 NC_001806.1 + 1416 0.66 0.920749
Target:  5'- cGUGGCCGAggccCAGCGaaucccGGGCGGCgccgGCg -3'
miRNA:   3'- -UACCGGCU----GUUGUau----CUCGUCGa---CGa -5'
5671 5' -54.5 NC_001806.1 + 33754 0.66 0.920749
Target:  5'- -gGuGUCGGCGGCGgcugcGGCGGCUGCg -3'
miRNA:   3'- uaC-CGGCUGUUGUauc--UCGUCGACGa -5'
5671 5' -54.5 NC_001806.1 + 97932 0.66 0.914824
Target:  5'- -gGGCCG-CGuugccaucGCGUGGuGCgAGCUGCa -3'
miRNA:   3'- uaCCGGCuGU--------UGUAUCuCG-UCGACGa -5'
5671 5' -54.5 NC_001806.1 + 69260 0.66 0.914824
Target:  5'- --cGCCGGC-GCccAGcAGCGGCUGCUg -3'
miRNA:   3'- uacCGGCUGuUGuaUC-UCGUCGACGA- -5'
5671 5' -54.5 NC_001806.1 + 75719 0.66 0.895528
Target:  5'- -gGGCCGcCGACGUGGAGgCcguGCUGg- -3'
miRNA:   3'- uaCCGGCuGUUGUAUCUC-Gu--CGACga -5'
5671 5' -54.5 NC_001806.1 + 23051 0.67 0.888598
Target:  5'- cGUGGCCGGCGGCAgcgAGGccgccGUGGCcGCc -3'
miRNA:   3'- -UACCGGCUGUUGUa--UCU-----CGUCGaCGa -5'
5671 5' -54.5 NC_001806.1 + 92350 0.67 0.888598
Target:  5'- -cGGCCGGCcaGACGgcccccgccgAGAGCAGCUucgaggGCg -3'
miRNA:   3'- uaCCGGCUG--UUGUa---------UCUCGUCGA------CGa -5'
5671 5' -54.5 NC_001806.1 + 83912 0.67 0.881424
Target:  5'- -gGGUCGGC-GCGggggcGGGGaCAGCUGCUg -3'
miRNA:   3'- uaCCGGCUGuUGUa----UCUC-GUCGACGA- -5'
5671 5' -54.5 NC_001806.1 + 106501 0.67 0.881424
Target:  5'- cGUGGCCcgugggcaucugGACGACGggGGAGCuGgUGCUc -3'
miRNA:   3'- -UACCGG------------CUGUUGUa-UCUCGuCgACGA- -5'
5671 5' -54.5 NC_001806.1 + 58014 0.67 0.880693
Target:  5'- cGUGGCUGACcGCGUccgacgcGGAGUccuGGCUGUc -3'
miRNA:   3'- -UACCGGCUGuUGUA-------UCUCG---UCGACGa -5'
5671 5' -54.5 NC_001806.1 + 89510 0.67 0.866367
Target:  5'- cUGGCgGAUccgGGCGgcGAGCuGCUGCg -3'
miRNA:   3'- uACCGgCUG---UUGUauCUCGuCGACGa -5'
5671 5' -54.5 NC_001806.1 + 13524 0.68 0.850405
Target:  5'- -gGGCCuccGACGguGCGUuuaGGAGCAcGCUGCg -3'
miRNA:   3'- uaCCGG---CUGU--UGUA---UCUCGU-CGACGa -5'
5671 5' -54.5 NC_001806.1 + 25904 0.68 0.815991
Target:  5'- -aGGCgGGCGGCGguccGGGCGGCgUGCg -3'
miRNA:   3'- uaCCGgCUGUUGUau--CUCGUCG-ACGa -5'
5671 5' -54.5 NC_001806.1 + 103124 0.68 0.815991
Target:  5'- -cGGCCGccugcaugGCGGCGUucuccAGGGCAGCgGCa -3'
miRNA:   3'- uaCCGGC--------UGUUGUA-----UCUCGUCGaCGa -5'
5671 5' -54.5 NC_001806.1 + 114308 0.68 0.815092
Target:  5'- cUGGCCcACAACAUGGccgaacgcacaacGGC-GCUGCUc -3'
miRNA:   3'- uACCGGcUGUUGUAUC-------------UCGuCGACGA- -5'
5671 5' -54.5 NC_001806.1 + 151545 0.69 0.797673
Target:  5'- -gGGCCcgGGCGGCcgGGGGCGGCggggGCc -3'
miRNA:   3'- uaCCGG--CUGUUGuaUCUCGUCGa---CGa -5'
5671 5' -54.5 NC_001806.1 + 5489 0.69 0.788268
Target:  5'- -gGGCCGGCGGgAaggaGGAGCAGCggagGCc -3'
miRNA:   3'- uaCCGGCUGUUgUa---UCUCGUCGa---CGa -5'
5671 5' -54.5 NC_001806.1 + 100330 0.69 0.778712
Target:  5'- cAUGGCCGGCGAC---GAGCuGGUUGUa -3'
miRNA:   3'- -UACCGGCUGUUGuauCUCG-UCGACGa -5'
5671 5' -54.5 NC_001806.1 + 119544 0.69 0.769014
Target:  5'- -aGGCCGuCAGCGggggcgccaugGGGGCGGCUGaCg -3'
miRNA:   3'- uaCCGGCuGUUGUa----------UCUCGUCGAC-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.