miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5673 5' -52.4 NC_001806.1 + 34490 0.66 0.978118
Target:  5'- gGAGAcGGGGGgaaagCAAGGACACgGc -3'
miRNA:   3'- -CUCUaCCUCCagua-GUUCCUGUGgUa -5'
5673 5' -52.4 NC_001806.1 + 73886 0.66 0.975596
Target:  5'- aGGGUGGAGG-CG--GAGGAuCGCCAg -3'
miRNA:   3'- cUCUACCUCCaGUagUUCCU-GUGGUa -5'
5673 5' -52.4 NC_001806.1 + 17604 0.66 0.972868
Target:  5'- gGAGAgcaccGAGGUCGU---GGACGCCGUg -3'
miRNA:   3'- -CUCUac---CUCCAGUAguuCCUGUGGUA- -5'
5673 5' -52.4 NC_001806.1 + 147274 0.66 0.972868
Target:  5'- aGAGgcGGAGGcCGcCGAGGACGUCAg -3'
miRNA:   3'- -CUCuaCCUCCaGUaGUUCCUGUGGUa -5'
5673 5' -52.4 NC_001806.1 + 28177 0.66 0.966763
Target:  5'- cGAGGUGaGGGGcCgggcgccauGUCuGGGGCGCCAUa -3'
miRNA:   3'- -CUCUAC-CUCCaG---------UAGuUCCUGUGGUA- -5'
5673 5' -52.4 NC_001806.1 + 55284 0.67 0.959746
Target:  5'- aGAGcacGUGGGGGUCcguuagGUUggGGGCGCUGUc -3'
miRNA:   3'- -CUC---UACCUCCAG------UAGuuCCUGUGGUA- -5'
5673 5' -52.4 NC_001806.1 + 99683 0.67 0.955881
Target:  5'- gGGGAgUGGGGG-CAU--GGGACGCCGg -3'
miRNA:   3'- -CUCU-ACCUCCaGUAguUCCUGUGGUa -5'
5673 5' -52.4 NC_001806.1 + 20992 0.67 0.947412
Target:  5'- -cGgcGGGGGUCGUCGGGGu--CCGUg -3'
miRNA:   3'- cuCuaCCUCCAGUAGUUCCuguGGUA- -5'
5673 5' -52.4 NC_001806.1 + 72192 0.67 0.947412
Target:  5'- aGGGAUGGGGcUguUCAGGGACGgCGa -3'
miRNA:   3'- -CUCUACCUCcAguAGUUCCUGUgGUa -5'
5673 5' -52.4 NC_001806.1 + 2473 0.68 0.937934
Target:  5'- gGGGGUGGGGGUUAUCGucGucguCGCCGc -3'
miRNA:   3'- -CUCUACCUCCAGUAGUucCu---GUGGUa -5'
5673 5' -52.4 NC_001806.1 + 67707 0.69 0.909728
Target:  5'- gGGGggGGGGGUCGa-AAGGACACuCAc -3'
miRNA:   3'- -CUCuaCCUCCAGUagUUCCUGUG-GUa -5'
5673 5' -52.4 NC_001806.1 + 133202 0.7 0.843269
Target:  5'- cGGAUGcggcuuccGGGGUgAUCGAGGACGCCc- -3'
miRNA:   3'- cUCUAC--------CUCCAgUAGUUCCUGUGGua -5'
5673 5' -52.4 NC_001806.1 + 76907 0.7 0.834756
Target:  5'- ----cGGAGGUCucUCGAGGAgGCCGa -3'
miRNA:   3'- cucuaCCUCCAGu-AGUUCCUgUGGUa -5'
5673 5' -52.4 NC_001806.1 + 68502 1.05 0.009489
Target:  5'- gGAGAUGGAGGUCAUCAAGGACACCAUc -3'
miRNA:   3'- -CUCUACCUCCAGUAGUUCCUGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.