miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5677 3' -66.9 NC_001806.1 + 150982 0.66 0.44346
Target:  5'- cGGGCCCaCgAGCCgCGGCgcgccaGGCGg- -3'
miRNA:   3'- -CCCGGGgGgUCGGgGUCGag----CCGCag -5'
5677 3' -66.9 NC_001806.1 + 77636 0.66 0.44346
Target:  5'- -uGCUUCCCGGCCgUgaccgacaAGCUCGGCG-Cg -3'
miRNA:   3'- ccCGGGGGGUCGGgG--------UCGAGCCGCaG- -5'
5677 3' -66.9 NC_001806.1 + 41742 0.66 0.44346
Target:  5'- cGGGCCaCCCgCGGgggaCCAGgagcuuUUCGGCGUCc -3'
miRNA:   3'- -CCCGG-GGG-GUCgg--GGUC------GAGCCGCAG- -5'
5677 3' -66.9 NC_001806.1 + 74034 0.66 0.44346
Target:  5'- uGGGCCCCgaGGCCgUucaGGUUCGGCu-- -3'
miRNA:   3'- -CCCGGGGggUCGGgG---UCGAGCCGcag -5'
5677 3' -66.9 NC_001806.1 + 23517 0.66 0.435032
Target:  5'- cGGCCCgCCgagGGCCCCgacccccugggcGGCUggCGGCGg- -3'
miRNA:   3'- cCCGGGgGG---UCGGGG------------UCGA--GCCGCag -5'
5677 3' -66.9 NC_001806.1 + 147364 0.66 0.435032
Target:  5'- -cGCCCuCUUGGCCCCuGC-CGGCG-Cg -3'
miRNA:   3'- ccCGGG-GGGUCGGGGuCGaGCCGCaG- -5'
5677 3' -66.9 NC_001806.1 + 127536 0.66 0.435032
Target:  5'- cGGGgUCCUCGGCg--GGCUCGGgGUCg -3'
miRNA:   3'- -CCCgGGGGGUCGgggUCGAGCCgCAG- -5'
5677 3' -66.9 NC_001806.1 + 123756 0.66 0.435032
Target:  5'- gGGGCCUCCgGgcGCCCCAGC--GGCc-- -3'
miRNA:   3'- -CCCGGGGGgU--CGGGGUCGagCCGcag -5'
5677 3' -66.9 NC_001806.1 + 67187 0.66 0.435032
Target:  5'- aGGCCUcgCCCAGCCgcucggucugCCGGCcUGGCGg- -3'
miRNA:   3'- cCCGGG--GGGUCGG----------GGUCGaGCCGCag -5'
5677 3' -66.9 NC_001806.1 + 25871 0.66 0.434194
Target:  5'- cGGGCCCCCCGcgggcgcgcgcgcGCgCaaaaaaGGCgggCGGCGg- -3'
miRNA:   3'- -CCCGGGGGGU-------------CGgGg-----UCGa--GCCGCag -5'
5677 3' -66.9 NC_001806.1 + 62630 0.66 0.434194
Target:  5'- uGGGCUCCaggcacgggagcgCCuGCgCCAcggaccacuGCUUGGCGUCg -3'
miRNA:   3'- -CCCGGGG-------------GGuCGgGGU---------CGAGCCGCAG- -5'
5677 3' -66.9 NC_001806.1 + 23485 0.66 0.426698
Target:  5'- aGGCCCgCCCGcGCCCCguGGC-C-GUGUCg -3'
miRNA:   3'- cCCGGG-GGGU-CGGGG--UCGaGcCGCAG- -5'
5677 3' -66.9 NC_001806.1 + 107803 0.66 0.421743
Target:  5'- --uCCCCUCuGCCCCgggggaucggcuacaAGCUCaccGGCGUCg -3'
miRNA:   3'- cccGGGGGGuCGGGG---------------UCGAG---CCGCAG- -5'
5677 3' -66.9 NC_001806.1 + 151128 0.66 0.418459
Target:  5'- cGGcGCCCCCU--CCCC-GCcCGcGCGUCg -3'
miRNA:   3'- -CC-CGGGGGGucGGGGuCGaGC-CGCAG- -5'
5677 3' -66.9 NC_001806.1 + 80937 0.66 0.418459
Target:  5'- cGGCCCCCCG--CCCGuaUCGGCa-- -3'
miRNA:   3'- cCCGGGGGGUcgGGGUcgAGCCGcag -5'
5677 3' -66.9 NC_001806.1 + 1726 0.66 0.418459
Target:  5'- cGGCCgUCCAGCgCCGGCagcacggccCGGCGg- -3'
miRNA:   3'- cCCGGgGGGUCGgGGUCGa--------GCCGCag -5'
5677 3' -66.9 NC_001806.1 + 26998 0.66 0.418459
Target:  5'- cGGGCCgaCCGGgCUCGGUUCcGGCGcCg -3'
miRNA:   3'- -CCCGGggGGUCgGGGUCGAG-CCGCaG- -5'
5677 3' -66.9 NC_001806.1 + 102963 0.66 0.418459
Target:  5'- gGGcGCCCCCCcgucGCCCCcacccGC-CGGC-UCa -3'
miRNA:   3'- -CC-CGGGGGGu---CGGGGu----CGaGCCGcAG- -5'
5677 3' -66.9 NC_001806.1 + 50130 0.66 0.41764
Target:  5'- gGGGuuaguguCCCCCCaauccGGCCCCGacGCcgCGGUGUUc -3'
miRNA:   3'- -CCC-------GGGGGG-----UCGGGGU--CGa-GCCGCAG- -5'
5677 3' -66.9 NC_001806.1 + 125874 0.66 0.410317
Target:  5'- uGGCgCCCCGGCCCCucauggGGUUUuacgaGGCGg- -3'
miRNA:   3'- cCCGgGGGGUCGGGG------UCGAG-----CCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.