miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5677 5' -55.2 NC_001806.1 + 117655 0.66 0.945066
Target:  5'- ---cCGCGCuc-CCGGGAGGcUCGCa -3'
miRNA:   3'- gcuuGCGUGuacGGCCCUCCuAGUGc -5'
5677 5' -55.2 NC_001806.1 + 20554 0.66 0.945066
Target:  5'- -aGAUGC-CAUGCgGGGcGGggCGCGg -3'
miRNA:   3'- gcUUGCGuGUACGgCCCuCCuaGUGC- -5'
5677 5' -55.2 NC_001806.1 + 57676 0.66 0.942371
Target:  5'- aGAAgGCGccggggcuugcuucuCcgGUCGGGAGG-UCGCGa -3'
miRNA:   3'- gCUUgCGU---------------GuaCGGCCCUCCuAGUGC- -5'
5677 5' -55.2 NC_001806.1 + 62469 0.66 0.940527
Target:  5'- gCGGAC-CAgGguggagGCUGGGAGGGUCcCGu -3'
miRNA:   3'- -GCUUGcGUgUa-----CGGCCCUCCUAGuGC- -5'
5677 5' -55.2 NC_001806.1 + 99613 0.66 0.940527
Target:  5'- gGGGCGCGCGU-CUGGGuGGAaggaCAUGg -3'
miRNA:   3'- gCUUGCGUGUAcGGCCCuCCUa---GUGC- -5'
5677 5' -55.2 NC_001806.1 + 20714 0.66 0.940527
Target:  5'- gGggUGgGCccGCCGGGGGGG-CGgGg -3'
miRNA:   3'- gCuuGCgUGuaCGGCCCUCCUaGUgC- -5'
5677 5' -55.2 NC_001806.1 + 25613 0.66 0.935751
Target:  5'- gGAGgGCugGgGCCgGGGAGGG-CugGg -3'
miRNA:   3'- gCUUgCGugUaCGG-CCCUCCUaGugC- -5'
5677 5' -55.2 NC_001806.1 + 37989 0.66 0.935751
Target:  5'- uGGGgGCAC--GCCGGcGGGGGUC-CGa -3'
miRNA:   3'- gCUUgCGUGuaCGGCC-CUCCUAGuGC- -5'
5677 5' -55.2 NC_001806.1 + 25549 0.66 0.935751
Target:  5'- gGAGgGCugGgGCCgGGGAGGG-CugGg -3'
miRNA:   3'- gCUUgCGugUaCGG-CCCUCCUaGugC- -5'
5677 5' -55.2 NC_001806.1 + 25581 0.66 0.935751
Target:  5'- gGAGgGCugGgGCCgGGGAGGG-CugGg -3'
miRNA:   3'- gCUUgCGugUaCGG-CCCUCCUaGugC- -5'
5677 5' -55.2 NC_001806.1 + 4233 0.66 0.935261
Target:  5'- gCGAuaGCGCGCGUagaaggcGCC-GGAGG-UCGCGu -3'
miRNA:   3'- -GCU--UGCGUGUA-------CGGcCCUCCuAGUGC- -5'
5677 5' -55.2 NC_001806.1 + 105103 0.66 0.930739
Target:  5'- aGGGCgGCGgguCGUGgCGGGAGGAUUggGg -3'
miRNA:   3'- gCUUG-CGU---GUACgGCCCUCCUAGugC- -5'
5677 5' -55.2 NC_001806.1 + 127750 0.66 0.927618
Target:  5'- cCGGGCGgGC-UGCCGGGugcGGGccuguggcggccgucUCGCGa -3'
miRNA:   3'- -GCUUGCgUGuACGGCCCu--CCU---------------AGUGC- -5'
5677 5' -55.2 NC_001806.1 + 76573 0.66 0.927618
Target:  5'- uGGccGCGCGCGagcGCCGGGcccagcucgaggccgAGGGUCugGc -3'
miRNA:   3'- gCU--UGCGUGUa--CGGCCC---------------UCCUAGugC- -5'
5677 5' -55.2 NC_001806.1 + 95287 0.66 0.92549
Target:  5'- -uGGCGCGCAUGggggCGGGGGGcgCGgCGg -3'
miRNA:   3'- gcUUGCGUGUACg---GCCCUCCuaGU-GC- -5'
5677 5' -55.2 NC_001806.1 + 49999 0.67 0.920002
Target:  5'- gGGACGCGCcuucaCGcGGAGGcgCGCGg -3'
miRNA:   3'- gCUUGCGUGuacg-GC-CCUCCuaGUGC- -5'
5677 5' -55.2 NC_001806.1 + 99574 0.67 0.920002
Target:  5'- cCGGugGCg---GCgGGGGGGAaCGCGg -3'
miRNA:   3'- -GCUugCGuguaCGgCCCUCCUaGUGC- -5'
5677 5' -55.2 NC_001806.1 + 33094 0.67 0.920002
Target:  5'- --cGCGuCGCGUGCCGGcGAgcGGGUC-CGg -3'
miRNA:   3'- gcuUGC-GUGUACGGCC-CU--CCUAGuGC- -5'
5677 5' -55.2 NC_001806.1 + 50455 0.67 0.920002
Target:  5'- gCGGACGUg---GCgCGGGAGGAgcuguuUCGCGc -3'
miRNA:   3'- -GCUUGCGuguaCG-GCCCUCCU------AGUGC- -5'
5677 5' -55.2 NC_001806.1 + 143268 0.67 0.914277
Target:  5'- uGGGCGgGgGUGCgCGGGAGGuGUCGg- -3'
miRNA:   3'- gCUUGCgUgUACG-GCCCUCC-UAGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.