miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5679 3' -57.8 NC_001806.1 + 24666 0.66 0.833567
Target:  5'- --uGGCGCUgGGgcgcgagGCGGUGCGcgccGGCc- -3'
miRNA:   3'- guuUCGCGAgCCa------CGCCACGU----CCGuc -5'
5679 3' -57.8 NC_001806.1 + 25413 0.66 0.833567
Target:  5'- gGGGGCGaggggCGGUgGUGGUGCgcGGGCGc -3'
miRNA:   3'- gUUUCGCga---GCCA-CGCCACG--UCCGUc -5'
5679 3' -57.8 NC_001806.1 + 147644 0.66 0.825185
Target:  5'- aCAcGGCGCgCGuccGCGGgGCGGGCGGc -3'
miRNA:   3'- -GUuUCGCGaGCca-CGCCaCGUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 107710 0.66 0.816627
Target:  5'- uGAGGCcucacaUCGGUGCGGg--GGGCAGu -3'
miRNA:   3'- gUUUCGcg----AGCCACGCCacgUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 27019 0.66 0.816627
Target:  5'- --cGGCGC-CGGgugGCGGagGCcgAGGCGGu -3'
miRNA:   3'- guuUCGCGaGCCa--CGCCa-CG--UCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 106534 0.66 0.816627
Target:  5'- --uGGUGCUCgGGUGCgaugccgcgcuGGUGCgcgcgcgcuacGGGCGGg -3'
miRNA:   3'- guuUCGCGAG-CCACG-----------CCACG-----------UCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 71517 0.66 0.816627
Target:  5'- --cGGUGUUaugGuGUGCGG-GCGGGCGGg -3'
miRNA:   3'- guuUCGCGAg--C-CACGCCaCGUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 74931 0.66 0.789984
Target:  5'- gGGGGCGCccccugaGGUuacgGCGGcgcUGCGGGCGGa -3'
miRNA:   3'- gUUUCGCGag-----CCA----CGCC---ACGUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 94514 0.66 0.789984
Target:  5'- uGGAGCGCguUCGGgaguuuaUGGUGgGGGCGGu -3'
miRNA:   3'- gUUUCGCG--AGCCac-----GCCACgUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 86015 0.67 0.780808
Target:  5'- gGGGGCGCUUGGc-CGGggaGGGCAGg -3'
miRNA:   3'- gUUUCGCGAGCCacGCCacgUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 67220 0.67 0.771499
Target:  5'- gCGGGGCGCgcuGGUGggccaGGUG-AGGCAGg -3'
miRNA:   3'- -GUUUCGCGag-CCACg----CCACgUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 143238 0.67 0.762066
Target:  5'- ---cGUGCUggUGGUGCGGguuggggggggaUGUGGGCGGg -3'
miRNA:   3'- guuuCGCGA--GCCACGCC------------ACGUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 91008 0.67 0.762066
Target:  5'- -cGGGCGCgaCGGcgGCGGcaagggcgcgGCGGGCGGg -3'
miRNA:   3'- guUUCGCGa-GCCa-CGCCa---------CGUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 37792 0.67 0.752517
Target:  5'- cCGGGGCGCggGGguccGCGG-GCGGGgGGg -3'
miRNA:   3'- -GUUUCGCGagCCa---CGCCaCGUCCgUC- -5'
5679 3' -57.8 NC_001806.1 + 3618 0.67 0.752517
Target:  5'- ---cGCGCUcgccCGGUGCGGcgGCGgcgacGGCGGc -3'
miRNA:   3'- guuuCGCGA----GCCACGCCa-CGU-----CCGUC- -5'
5679 3' -57.8 NC_001806.1 + 10368 0.67 0.742864
Target:  5'- gGGGGCGCugggccaagaccUCGGggggGCGGggGgAGGCGGg -3'
miRNA:   3'- gUUUCGCG------------AGCCa---CGCCa-CgUCCGUC- -5'
5679 3' -57.8 NC_001806.1 + 88143 0.67 0.742864
Target:  5'- ---cGUGCUCcaGG-GCGGUGguGGaCAGg -3'
miRNA:   3'- guuuCGCGAG--CCaCGCCACguCC-GUC- -5'
5679 3' -57.8 NC_001806.1 + 150787 0.68 0.723276
Target:  5'- gAGAGCgGCUUGGUGCGGaGCucccGGgAGc -3'
miRNA:   3'- gUUUCG-CGAGCCACGCCaCGu---CCgUC- -5'
5679 3' -57.8 NC_001806.1 + 42308 0.68 0.703375
Target:  5'- --cAGCGCUgaCGGUGuCGGgGCGGGgGGc -3'
miRNA:   3'- guuUCGCGA--GCCAC-GCCaCGUCCgUC- -5'
5679 3' -57.8 NC_001806.1 + 151161 0.68 0.703375
Target:  5'- -cAGGCGCgccaGGUgcuccGCGGUgacgcGCAGGCGGa -3'
miRNA:   3'- guUUCGCGag--CCA-----CGCCA-----CGUCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.