Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5679 | 5' | -57.7 | NC_001806.1 | + | 137749 | 0.66 | 0.813176 |
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Target: 5'- cUCCUUGGGCGUCAccuccucacgGCCGuGGUguauugCUGg -3' miRNA: 3'- uAGGAGCCCGUAGUa---------CGGC-UCGa-----GAC- -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 47846 | 0.66 | 0.786193 |
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Target: 5'- gAUCCUaUGGGCcgCGUacGCCGAGCa--- -3' miRNA: 3'- -UAGGA-GCCCGuaGUA--CGGCUCGagac -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 78402 | 0.67 | 0.764643 |
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Target: 5'- cGUCCUCGGGCG-CAUGUgucucccaagcaccGCUCUGg -3' miRNA: 3'- -UAGGAGCCCGUaGUACGgcu-----------CGAGAC- -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 30789 | 0.68 | 0.70877 |
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Target: 5'- cUCCUCGGGCGgg--GCCGucgguGCcCUGg -3' miRNA: 3'- uAGGAGCCCGUaguaCGGCu----CGaGAC- -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 20111 | 0.68 | 0.70877 |
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Target: 5'- cGUCUgCGGGCGUCGgucgcGCCGGGC-CUu -3' miRNA: 3'- -UAGGaGCCCGUAGUa----CGGCUCGaGAc -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 145054 | 0.69 | 0.657943 |
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Target: 5'- uUCCUCGGuGU-UC-UGCCGGGCUCc- -3' miRNA: 3'- uAGGAGCC-CGuAGuACGGCUCGAGac -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 12931 | 0.69 | 0.647679 |
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Target: 5'- aAUCCUCGGG-GUCuuccggGgCGAGUUCUGg -3' miRNA: 3'- -UAGGAGCCCgUAGua----CgGCUCGAGAC- -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 38069 | 0.71 | 0.496421 |
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Target: 5'- cGUCCgccgCGGGCAg---GCUGGGCUUUGg -3' miRNA: 3'- -UAGGa---GCCCGUaguaCGGCUCGAGAC- -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 49737 | 0.76 | 0.289041 |
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Target: 5'- -cCCUgGGGCAUCcgGCCGGGUUUUa -3' miRNA: 3'- uaGGAgCCCGUAGuaCGGCUCGAGAc -5' |
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| 5679 | 5' | -57.7 | NC_001806.1 | + | 66375 | 1.05 | 0.003029 |
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Target: 5'- uAUCCUCGGGCAUCAUGCCGAGCUCUGc -3' miRNA: 3'- -UAGGAGCCCGUAGUACGGCUCGAGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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