miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5686 3' -58.9 NC_001806.1 + 76139 0.66 0.802026
Target:  5'- gUCGGaAGACUUgGGGggcgugCCGGCCCUg- -3'
miRNA:   3'- -AGCCgUCUGAGgUCUa-----GGUCGGGGuc -5'
5686 3' -58.9 NC_001806.1 + 126572 0.66 0.802026
Target:  5'- -aGGCGGuGCUCCgccgcGGAUCgGGCCUUGGu -3'
miRNA:   3'- agCCGUC-UGAGG-----UCUAGgUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 103738 0.66 0.802026
Target:  5'- -gGGCcgcuGACUCgggCGGGUCgCGcGCCCCAGa -3'
miRNA:   3'- agCCGu---CUGAG---GUCUAG-GU-CGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 100658 0.66 0.793162
Target:  5'- cUCGGCcaccAGGCUCCAG---CGGUCCCGc -3'
miRNA:   3'- -AGCCG----UCUGAGGUCuagGUCGGGGUc -5'
5686 3' -58.9 NC_001806.1 + 23856 0.66 0.793162
Target:  5'- gCGGCcuGGAUgcgCCAGAUCCccGaCCCCGa -3'
miRNA:   3'- aGCCG--UCUGa--GGUCUAGGu-C-GGGGUc -5'
5686 3' -58.9 NC_001806.1 + 54602 0.66 0.784157
Target:  5'- -gGGCAGGgUggaCCGGAccguagCCAGCCCgGGg -3'
miRNA:   3'- agCCGUCUgA---GGUCUa-----GGUCGGGgUC- -5'
5686 3' -58.9 NC_001806.1 + 144893 0.66 0.784157
Target:  5'- cCGG-AGGCuuuUCCGGGUucCCGGCCCgGGg -3'
miRNA:   3'- aGCCgUCUG---AGGUCUA--GGUCGGGgUC- -5'
5686 3' -58.9 NC_001806.1 + 141052 0.66 0.784157
Target:  5'- uUUGGC-GugUCgAacGUCCAGCCCCAc -3'
miRNA:   3'- -AGCCGuCugAGgUc-UAGGUCGGGGUc -5'
5686 3' -58.9 NC_001806.1 + 88789 0.66 0.784157
Target:  5'- cCGGUGGcCuUCCGGAgUCAGgCCCAGg -3'
miRNA:   3'- aGCCGUCuG-AGGUCUaGGUCgGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 150881 0.66 0.784157
Target:  5'- -gGGCcaGGGC-CCGGGcacgggccUCgGGCCCCAGg -3'
miRNA:   3'- agCCG--UCUGaGGUCU--------AGgUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 30151 0.66 0.784157
Target:  5'- gCGGCgcccaugccAGGCUCCGcccCCcGCCCCGGg -3'
miRNA:   3'- aGCCG---------UCUGAGGUcuaGGuCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 2100 0.66 0.775019
Target:  5'- gCGaGCAGcC-CCAGAaacUCCacGGCCCCGGc -3'
miRNA:   3'- aGC-CGUCuGaGGUCU---AGG--UCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 60005 0.66 0.775019
Target:  5'- cCGGgGGACggCCGGGUCCggAGCCgCGc -3'
miRNA:   3'- aGCCgUCUGa-GGUCUAGG--UCGGgGUc -5'
5686 3' -58.9 NC_001806.1 + 3549 0.66 0.765756
Target:  5'- -aGGCGGGCgcggCGGAcagCC-GCCCCAGg -3'
miRNA:   3'- agCCGUCUGag--GUCUa--GGuCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 3800 0.66 0.765756
Target:  5'- aCGGCGGcCgccgCguGcgCCAgGCCCCAGc -3'
miRNA:   3'- aGCCGUCuGa---GguCuaGGU-CGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 101308 0.66 0.756379
Target:  5'- -gGGCAGggGCUCCuccAUCCGGUcuCCCGGg -3'
miRNA:   3'- agCCGUC--UGAGGuc-UAGGUCG--GGGUC- -5'
5686 3' -58.9 NC_001806.1 + 18657 0.66 0.756379
Target:  5'- cCGGCGGcCUCCAGAUCgguGGCaUCGGa -3'
miRNA:   3'- aGCCGUCuGAGGUCUAGg--UCGgGGUC- -5'
5686 3' -58.9 NC_001806.1 + 132750 0.66 0.756379
Target:  5'- cUCGGCGGcagCCGGAugccUCCuGCCCgCGGu -3'
miRNA:   3'- -AGCCGUCugaGGUCU----AGGuCGGG-GUC- -5'
5686 3' -58.9 NC_001806.1 + 82108 0.67 0.746895
Target:  5'- aUCGGcCGGGCaUCCAGG-CCGagccGCCCCu- -3'
miRNA:   3'- -AGCC-GUCUG-AGGUCUaGGU----CGGGGuc -5'
5686 3' -58.9 NC_001806.1 + 95310 0.67 0.745941
Target:  5'- gCGGCGGACgcgCCcaagggcGGcgCgGGCCCCGa -3'
miRNA:   3'- aGCCGUCUGa--GG-------UCuaGgUCGGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.