miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5686 3' -58.9 NC_001806.1 + 2100 0.66 0.775019
Target:  5'- gCGaGCAGcC-CCAGAaacUCCacGGCCCCGGc -3'
miRNA:   3'- aGC-CGUCuGaGGUCU---AGG--UCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 2285 0.69 0.616869
Target:  5'- cUCGGCGGACcacUCCGGcggCCcccccgaGGCCCCGc -3'
miRNA:   3'- -AGCCGUCUG---AGGUCua-GG-------UCGGGGUc -5'
5686 3' -58.9 NC_001806.1 + 3113 0.71 0.509115
Target:  5'- cUCGGCAGGCg-CGGGUCCcgcggcagcgcgGGgCCCAGg -3'
miRNA:   3'- -AGCCGUCUGagGUCUAGG------------UCgGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 3353 0.73 0.392383
Target:  5'- -gGGCuGGCgggCCGGGccccggCCAGCCCCGGg -3'
miRNA:   3'- agCCGuCUGa--GGUCUa-----GGUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 3549 0.66 0.765756
Target:  5'- -aGGCGGGCgcggCGGAcagCC-GCCCCAGg -3'
miRNA:   3'- agCCGUCUGag--GUCUa--GGuCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 3800 0.66 0.765756
Target:  5'- aCGGCGGcCgccgCguGcgCCAgGCCCCAGc -3'
miRNA:   3'- aGCCGUCuGa---GguCuaGGU-CGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 6048 0.73 0.392383
Target:  5'- cUGGCGccgugcccGACUCC-GcgCCGGCCCCGGg -3'
miRNA:   3'- aGCCGU--------CUGAGGuCuaGGUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 6997 0.67 0.717892
Target:  5'- gUGGCucucgAGAUgagCCAGAcccaacccCCGGCCCCAGu -3'
miRNA:   3'- aGCCG-----UCUGa--GGUCUa-------GGUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 12075 0.68 0.678264
Target:  5'- gCGGCuGuugggCCAGAUUgAGCUCCAGg -3'
miRNA:   3'- aGCCGuCuga--GGUCUAGgUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 18657 0.66 0.756379
Target:  5'- cCGGCGGcCUCCAGAUCgguGGCaUCGGa -3'
miRNA:   3'- aGCCGUCuGAGGUCUAGg--UCGgGGUC- -5'
5686 3' -58.9 NC_001806.1 + 21637 0.7 0.57174
Target:  5'- aUCGGCgucaucgaccucgucGGACUCCGGGUCCucGUCCUc- -3'
miRNA:   3'- -AGCCG---------------UCUGAGGUCUAGGu-CGGGGuc -5'
5686 3' -58.9 NC_001806.1 + 22275 0.7 0.546992
Target:  5'- -gGGguGGCUCCAGAaCCcgcgcguGGuCCCCGGg -3'
miRNA:   3'- agCCguCUGAGGUCUaGG-------UC-GGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 23856 0.66 0.793162
Target:  5'- gCGGCcuGGAUgcgCCAGAUCCccGaCCCCGa -3'
miRNA:   3'- aGCCG--UCUGa--GGUCUAGGu-C-GGGGUc -5'
5686 3' -58.9 NC_001806.1 + 27764 0.68 0.658195
Target:  5'- uUUGGgGGACaCCGGGUUgGGCCCCc- -3'
miRNA:   3'- -AGCCgUCUGaGGUCUAGgUCGGGGuc -5'
5686 3' -58.9 NC_001806.1 + 30151 0.66 0.784157
Target:  5'- gCGGCgcccaugccAGGCUCCGcccCCcGCCCCGGg -3'
miRNA:   3'- aGCCG---------UCUGAGGUcuaGGuCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 54602 0.66 0.784157
Target:  5'- -gGGCAGGgUggaCCGGAccguagCCAGCCCgGGg -3'
miRNA:   3'- agCCGUCUgA---GGUCUa-----GGUCGGGgUC- -5'
5686 3' -58.9 NC_001806.1 + 54784 0.7 0.557843
Target:  5'- gCGGCAG-CaCCAGggCCAGCCCg-- -3'
miRNA:   3'- aGCCGUCuGaGGUCuaGGUCGGGguc -5'
5686 3' -58.9 NC_001806.1 + 55135 0.77 0.232937
Target:  5'- cUCGuGCGGGCugUCCA--UCCGGCCCCAGg -3'
miRNA:   3'- -AGC-CGUCUG--AGGUcuAGGUCGGGGUC- -5'
5686 3' -58.9 NC_001806.1 + 56519 0.73 0.38414
Target:  5'- gCGGCAGGC-CCGGGcCCGGCguucCCCGGg -3'
miRNA:   3'- aGCCGUCUGaGGUCUaGGUCG----GGGUC- -5'
5686 3' -58.9 NC_001806.1 + 60005 0.66 0.775019
Target:  5'- cCGGgGGACggCCGGGUCCggAGCCgCGc -3'
miRNA:   3'- aGCCgUCUGa-GGUCUAGG--UCGGgGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.