miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5686 5' -60.7 NC_001806.1 + 54141 0.66 0.715261
Target:  5'- gGGCCGguaggcGUGUuccgauGCCCgcagagGCAUGCCGu -3'
miRNA:   3'- -CCGGCa-----CACGuc----CGGGa-----CGUACGGCu -5'
5686 5' -60.7 NC_001806.1 + 32945 0.66 0.705523
Target:  5'- gGGCCGuUGUG-GGGCCCcGg--GCCGGg -3'
miRNA:   3'- -CCGGC-ACACgUCCGGGaCguaCGGCU- -5'
5686 5' -60.7 NC_001806.1 + 24796 0.66 0.705523
Target:  5'- cGGCCc---GgGGGCCCUGCc-GCCGGc -3'
miRNA:   3'- -CCGGcacaCgUCCGGGACGuaCGGCU- -5'
5686 5' -60.7 NC_001806.1 + 3804 0.66 0.705523
Target:  5'- cGGCCGccgcGUGCgccAGGCCCcagccgaagcgGCcgGCCGc -3'
miRNA:   3'- -CCGGCa---CACG---UCCGGGa----------CGuaCGGCu -5'
5686 5' -60.7 NC_001806.1 + 76154 0.66 0.705523
Target:  5'- gGGC---GUGCcGGCCCUGCgccaguacGUGCCGu -3'
miRNA:   3'- -CCGgcaCACGuCCGGGACG--------UACGGCu -5'
5686 5' -60.7 NC_001806.1 + 74864 0.66 0.705523
Target:  5'- cGGCCGUccuggcgacccUGCGGGCcucCCUGCcgGCgGGc -3'
miRNA:   3'- -CCGGCAc----------ACGUCCG---GGACGuaCGgCU- -5'
5686 5' -60.7 NC_001806.1 + 89547 0.66 0.695727
Target:  5'- cGGCCGgcggcccgGUuuauucGCGucGGCCCgGCcgGCCGGg -3'
miRNA:   3'- -CCGGCa-------CA------CGU--CCGGGaCGuaCGGCU- -5'
5686 5' -60.7 NC_001806.1 + 21962 0.66 0.695727
Target:  5'- cGGCCGg--GCAGcCCCgGCggGUCGAg -3'
miRNA:   3'- -CCGGCacaCGUCcGGGaCGuaCGGCU- -5'
5686 5' -60.7 NC_001806.1 + 19104 0.66 0.695727
Target:  5'- gGGCCGacgggGUGgGGGCCCggggcUGCGUuucCCGGg -3'
miRNA:   3'- -CCGGCa----CACgUCCGGG-----ACGUAc--GGCU- -5'
5686 5' -60.7 NC_001806.1 + 151570 0.66 0.689825
Target:  5'- gGGCCGcgaUGgcggcggcgGCGGGCCauggagacagagaGCGUGCCGGg -3'
miRNA:   3'- -CCGGC---ACa--------CGUCCGGga-----------CGUACGGCU- -5'
5686 5' -60.7 NC_001806.1 + 127059 0.66 0.675992
Target:  5'- -uCCGgg-GCccGGCCCUGCugcUGCCGAa -3'
miRNA:   3'- ccGGCacaCGu-CCGGGACGu--ACGGCU- -5'
5686 5' -60.7 NC_001806.1 + 151691 0.66 0.675992
Target:  5'- cGGCCGg--GgGGGCCCgggcUGCccGCCGc -3'
miRNA:   3'- -CCGGCacaCgUCCGGG----ACGuaCGGCu -5'
5686 5' -60.7 NC_001806.1 + 51791 0.66 0.675992
Target:  5'- gGGCCGUG-GC-GGCCaaGUAcGCCGc -3'
miRNA:   3'- -CCGGCACaCGuCCGGgaCGUaCGGCu -5'
5686 5' -60.7 NC_001806.1 + 26974 0.66 0.675992
Target:  5'- cGCCGcGgcucGUGGGCCCgcgaGCggGCCGAc -3'
miRNA:   3'- cCGGCaCa---CGUCCGGGa---CGuaCGGCU- -5'
5686 5' -60.7 NC_001806.1 + 72135 0.66 0.666068
Target:  5'- cGCCGgcccGUGGGCCCUGCGcccccUGUCGu -3'
miRNA:   3'- cCGGCaca-CGUCCGGGACGU-----ACGGCu -5'
5686 5' -60.7 NC_001806.1 + 22918 0.66 0.666068
Target:  5'- cGGCCGgagGgacccGCGGGCCCcGCuuccccGCCGc -3'
miRNA:   3'- -CCGGCa--Ca----CGUCCGGGaCGua----CGGCu -5'
5686 5' -60.7 NC_001806.1 + 23503 0.67 0.646151
Target:  5'- uGGCCGUGUcGCGccGGCCC-----GCCGAg -3'
miRNA:   3'- -CCGGCACA-CGU--CCGGGacguaCGGCU- -5'
5686 5' -60.7 NC_001806.1 + 22187 0.67 0.646151
Target:  5'- cGGCCGUGUGgGcGCCCgagcuggGCGacGCCGc -3'
miRNA:   3'- -CCGGCACACgUcCGGGa------CGUa-CGGCu -5'
5686 5' -60.7 NC_001806.1 + 24302 0.67 0.646151
Target:  5'- uGGCCGgcgGcGCGGGaCCUGCgccgcacgGUGCUGGc -3'
miRNA:   3'- -CCGGCa--CaCGUCCgGGACG--------UACGGCU- -5'
5686 5' -60.7 NC_001806.1 + 88062 0.67 0.636173
Target:  5'- cGGgCGUGgGCAGGCCCcugGCc-GCCa- -3'
miRNA:   3'- -CCgGCACaCGUCCGGGa--CGuaCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.