miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5687 3' -62.9 NC_001806.1 + 2490 0.66 0.675103
Target:  5'- uCgUCGUcgccgccgccGCaCGCGGCCuGGGCGg-CGGGg -3'
miRNA:   3'- -GgAGCA----------UG-GCGCCGG-CCCGCagGCCU- -5'
5687 3' -62.9 NC_001806.1 + 151534 0.66 0.675103
Target:  5'- --aCGgcgcCCGUGGgcCCGGGCGgCCGGGg -3'
miRNA:   3'- ggaGCau--GGCGCC--GGCCCGCaGGCCU- -5'
5687 3' -62.9 NC_001806.1 + 102503 0.66 0.665566
Target:  5'- cCCUCGgucccgaucACCGCGGCCaGGCacgCCaGGu -3'
miRNA:   3'- -GGAGCa--------UGGCGCCGGcCCGca-GG-CCu -5'
5687 3' -62.9 NC_001806.1 + 47184 0.66 0.665566
Target:  5'- gCUUCGccACCGCccccccgcccGGCCGGGgGUCCc-- -3'
miRNA:   3'- -GGAGCa-UGGCG----------CCGGCCCgCAGGccu -5'
5687 3' -62.9 NC_001806.1 + 23706 0.66 0.665566
Target:  5'- gCCUCG-AUCGCcGCgCGGuGCG-CCGGGc -3'
miRNA:   3'- -GGAGCaUGGCGcCG-GCC-CGCaGGCCU- -5'
5687 3' -62.9 NC_001806.1 + 100381 0.66 0.665566
Target:  5'- uCC-CGUcGCCggGCGGCgCGGGgG-CCGGGg -3'
miRNA:   3'- -GGaGCA-UGG--CGCCG-GCCCgCaGGCCU- -5'
5687 3' -62.9 NC_001806.1 + 56647 0.66 0.664611
Target:  5'- aCCUCaucgGCCgGCGGCCcgugggaucguugGGGgGUCgGGGg -3'
miRNA:   3'- -GGAGca--UGG-CGCCGG-------------CCCgCAGgCCU- -5'
5687 3' -62.9 NC_001806.1 + 30386 0.66 0.656006
Target:  5'- gCCgggcgCGUGCgacgguggcgCGCGGCuCGGGgGggCCGGGc -3'
miRNA:   3'- -GGa----GCAUG----------GCGCCG-GCCCgCa-GGCCU- -5'
5687 3' -62.9 NC_001806.1 + 57018 0.66 0.646429
Target:  5'- cCCa-GUGCCaggcacuggGUGGCCGGGCccggggCCGGGg -3'
miRNA:   3'- -GGagCAUGG---------CGCCGGCCCGca----GGCCU- -5'
5687 3' -62.9 NC_001806.1 + 51939 0.66 0.646429
Target:  5'- gUCUcCGUGCUGUaccGG-UGGGCGUCCuGGAu -3'
miRNA:   3'- -GGA-GCAUGGCG---CCgGCCCGCAGG-CCU- -5'
5687 3' -62.9 NC_001806.1 + 33370 0.66 0.646429
Target:  5'- gCC-CGgagaGCCGCGGCaccCGGacGCGcCCGGAa -3'
miRNA:   3'- -GGaGCa---UGGCGCCG---GCC--CGCaGGCCU- -5'
5687 3' -62.9 NC_001806.1 + 110203 0.66 0.646429
Target:  5'- uCCUCGUGCgugccgcaCGCGGUgGGGgcCGaaCCGGAc -3'
miRNA:   3'- -GGAGCAUG--------GCGCCGgCCC--GCa-GGCCU- -5'
5687 3' -62.9 NC_001806.1 + 130841 0.66 0.646429
Target:  5'- aCUCG----GCGGCCGGGgGaUCUGGGa -3'
miRNA:   3'- gGAGCauggCGCCGGCCCgC-AGGCCU- -5'
5687 3' -62.9 NC_001806.1 + 149856 0.66 0.646429
Target:  5'- -gUCGUA-UGCGGCUGGaGgGUCgCGGAc -3'
miRNA:   3'- ggAGCAUgGCGCCGGCC-CgCAG-GCCU- -5'
5687 3' -62.9 NC_001806.1 + 147680 0.66 0.636843
Target:  5'- gCCcCGgggGCCGgGGCgcggGGGCGggccCCGGAg -3'
miRNA:   3'- -GGaGCa--UGGCgCCGg---CCCGCa---GGCCU- -5'
5687 3' -62.9 NC_001806.1 + 2793 0.66 0.627253
Target:  5'- gCC-CGgggcGCCGCgGGCUGGGCGggggCGGGc -3'
miRNA:   3'- -GGaGCa---UGGCG-CCGGCCCGCag--GCCU- -5'
5687 3' -62.9 NC_001806.1 + 3453 0.66 0.627253
Target:  5'- aCUCGacgGCCacGCGGCCGGccugggcgcgGCGcCCGGc -3'
miRNA:   3'- gGAGCa--UGG--CGCCGGCC----------CGCaGGCCu -5'
5687 3' -62.9 NC_001806.1 + 24338 0.66 0.627253
Target:  5'- gCCUCGgGCCGCguguucGGcCCGGGgGUCUucgcgcgcguGGAg -3'
miRNA:   3'- -GGAGCaUGGCG------CC-GGCCCgCAGG----------CCU- -5'
5687 3' -62.9 NC_001806.1 + 20645 0.67 0.617666
Target:  5'- --aCGgGCCGCGGCCacGGGCccCCGGc -3'
miRNA:   3'- ggaGCaUGGCGCCGG--CCCGcaGGCCu -5'
5687 3' -62.9 NC_001806.1 + 151272 0.67 0.611919
Target:  5'- gCCgggCGguggggGCCGgGGCCGGGgGgcggcggcggugggCCGGGc -3'
miRNA:   3'- -GGa--GCa-----UGGCgCCGGCCCgCa-------------GGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.