miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5687 5' -54.4 NC_001806.1 + 151209 0.66 0.948682
Target:  5'- cGGcgGAAGGCGGaaggGGCGCGAggggGgGUGg -3'
miRNA:   3'- -UCa-CUUUCGCCgg--CCGCGCUa---UgUAC- -5'
5687 5' -54.4 NC_001806.1 + 3827 0.66 0.944254
Target:  5'- cAGccGAAGCGGCCGGcCGCcaugGCGUa -3'
miRNA:   3'- -UCacUUUCGCCGGCC-GCGcua-UGUAc -5'
5687 5' -54.4 NC_001806.1 + 24865 0.66 0.939583
Target:  5'- cGUGcuGGCGG-CGGCGgGGgcCGUGg -3'
miRNA:   3'- uCACuuUCGCCgGCCGCgCUauGUAC- -5'
5687 5' -54.4 NC_001806.1 + 83816 0.66 0.934667
Target:  5'- --aGggGGCggGGUCGGCGCGGgauccgGCAc- -3'
miRNA:   3'- ucaCuuUCG--CCGGCCGCGCUa-----UGUac -5'
5687 5' -54.4 NC_001806.1 + 42653 0.66 0.929506
Target:  5'- cGGUGc-GGgGGCUGGCGUuGUugAUGg -3'
miRNA:   3'- -UCACuuUCgCCGGCCGCGcUAugUAC- -5'
5687 5' -54.4 NC_001806.1 + 4302 0.66 0.929506
Target:  5'- cGUG-AAGCGGCCcguGGCGuCGcgGCcgGc -3'
miRNA:   3'- uCACuUUCGCCGG---CCGC-GCuaUGuaC- -5'
5687 5' -54.4 NC_001806.1 + 74639 0.67 0.924097
Target:  5'- gAG-GAAGcgcuGCGGCaGGCGCGGgcCAUGg -3'
miRNA:   3'- -UCaCUUU----CGCCGgCCGCGCUauGUAC- -5'
5687 5' -54.4 NC_001806.1 + 98624 0.67 0.924097
Target:  5'- uGGUGAugggcaucGUGGgCGGCGUGGUAUcgGc -3'
miRNA:   3'- -UCACUuu------CGCCgGCCGCGCUAUGuaC- -5'
5687 5' -54.4 NC_001806.1 + 151542 0.67 0.920165
Target:  5'- cGUGGgcccGGGCGGCCGGgggcggcgggggcCGCGAUGgcggcggcggcgggcCAUGg -3'
miRNA:   3'- uCACU----UUCGCCGGCC-------------GCGCUAU---------------GUAC- -5'
5687 5' -54.4 NC_001806.1 + 75212 0.67 0.912541
Target:  5'- cGGUGGAuGCGGCCGuGCG-GGcGCAc- -3'
miRNA:   3'- -UCACUUuCGCCGGC-CGCgCUaUGUac -5'
5687 5' -54.4 NC_001806.1 + 62306 0.67 0.906396
Target:  5'- cAGUGgcGGCgGGCCuGGCGCGGa----- -3'
miRNA:   3'- -UCACuuUCG-CCGG-CCGCGCUauguac -5'
5687 5' -54.4 NC_001806.1 + 6620 0.67 0.906396
Target:  5'- cGUcGAGGCGaCCGGCGgCGAccguUGCGUGg -3'
miRNA:   3'- uCAcUUUCGCcGGCCGC-GCU----AUGUAC- -5'
5687 5' -54.4 NC_001806.1 + 98232 0.67 0.906396
Target:  5'- --cGAGcuGCGGCUGacGCGCGAUGCGa- -3'
miRNA:   3'- ucaCUUu-CGCCGGC--CGCGCUAUGUac -5'
5687 5' -54.4 NC_001806.1 + 150786 0.67 0.906396
Target:  5'- --gGAGAGCGGCuUGGUGCGGaGCu-- -3'
miRNA:   3'- ucaCUUUCGCCG-GCCGCGCUaUGuac -5'
5687 5' -54.4 NC_001806.1 + 79535 0.67 0.906396
Target:  5'- --cGAAAgcacGCGGCCGGCGCc---CGUGg -3'
miRNA:   3'- ucaCUUU----CGCCGGCCGCGcuauGUAC- -5'
5687 5' -54.4 NC_001806.1 + 119739 0.68 0.89338
Target:  5'- --gGGAAGCccuGGCCGGCgGCGAcgGCcgGa -3'
miRNA:   3'- ucaCUUUCG---CCGGCCG-CGCUa-UGuaC- -5'
5687 5' -54.4 NC_001806.1 + 102268 0.68 0.879421
Target:  5'- gAG-GAAcGCGGCggCGGCGCGGUuUAUGu -3'
miRNA:   3'- -UCaCUUuCGCCG--GCCGCGCUAuGUAC- -5'
5687 5' -54.4 NC_001806.1 + 59137 0.68 0.879421
Target:  5'- uGGUGAGGGCagccgGGCCGGgGUcucgGGUGCGg- -3'
miRNA:   3'- -UCACUUUCG-----CCGGCCgCG----CUAUGUac -5'
5687 5' -54.4 NC_001806.1 + 127764 0.68 0.872098
Target:  5'- gGGUGcgggccuguGGCGGCCGucuCGCGAUccgcGCAUGg -3'
miRNA:   3'- -UCACuu-------UCGCCGGCc--GCGCUA----UGUAC- -5'
5687 5' -54.4 NC_001806.1 + 46902 0.68 0.872098
Target:  5'- aGGUaGGGGCGGCCcGUGCGGguugcuuaaaUGCGUGg -3'
miRNA:   3'- -UCAcUUUCGCCGGcCGCGCU----------AUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.