miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5689 3' -51.9 NC_001806.1 + 136893 0.66 0.983554
Target:  5'- -cGGGGCUGGGgUgaaccuuuacccagcCGUCCUCGGggGa -3'
miRNA:   3'- auUUUCGACUCgA---------------GCGGGAGCCuuUc -5'
5689 3' -51.9 NC_001806.1 + 78364 0.66 0.977819
Target:  5'- gGAAAGCUGAGUccCGCCCaggcgcuggcggCGGuGAGc -3'
miRNA:   3'- aUUUUCGACUCGa-GCGGGa-----------GCCuUUC- -5'
5689 3' -51.9 NC_001806.1 + 64351 0.66 0.975788
Target:  5'- ---cAGCUGGGCuUCGUgCUCGcGAAGc -3'
miRNA:   3'- auuuUCGACUCG-AGCGgGAGC-CUUUc -5'
5689 3' -51.9 NC_001806.1 + 36735 0.66 0.975788
Target:  5'- cAAAAGggGGGaugCGCCCgggCGGGAAGc -3'
miRNA:   3'- aUUUUCgaCUCga-GCGGGa--GCCUUUC- -5'
5689 3' -51.9 NC_001806.1 + 30794 0.66 0.973063
Target:  5'- --cGGGCgGGGCcgucggUGCCCUgGGAGGGa -3'
miRNA:   3'- auuUUCGaCUCGa-----GCGGGAgCCUUUC- -5'
5689 3' -51.9 NC_001806.1 + 100760 0.67 0.959938
Target:  5'- gGAcAGCgcGAGCUCGgCCUCGGc--- -3'
miRNA:   3'- aUUuUCGa-CUCGAGCgGGAGCCuuuc -5'
5689 3' -51.9 NC_001806.1 + 10373 0.67 0.956068
Target:  5'- ----cGCUGGGCcaaGaCCUCGGggGGg -3'
miRNA:   3'- auuuuCGACUCGag-CgGGAGCCuuUC- -5'
5689 3' -51.9 NC_001806.1 + 18504 0.68 0.942959
Target:  5'- -cAGGGCUGGGa--GCCCUCcuGGggGGu -3'
miRNA:   3'- auUUUCGACUCgagCGGGAG--CCuuUC- -5'
5689 3' -51.9 NC_001806.1 + 57676 0.7 0.889686
Target:  5'- aGAAGGCgccgGGGCUUGCUUcuccggUCGGGAGGu -3'
miRNA:   3'- aUUUUCGa---CUCGAGCGGG------AGCCUUUC- -5'
5689 3' -51.9 NC_001806.1 + 139106 0.7 0.867376
Target:  5'- cGAGAuGCUGAccgGCUCGCCgCgCGGggGGc -3'
miRNA:   3'- aUUUU-CGACU---CGAGCGG-GaGCCuuUC- -5'
5689 3' -51.9 NC_001806.1 + 92294 0.7 0.859469
Target:  5'- cAAAAcGCUGAcgGUcgCGCUCUCGGAGGGg -3'
miRNA:   3'- aUUUU-CGACU--CGa-GCGGGAGCCUUUC- -5'
5689 3' -51.9 NC_001806.1 + 95924 0.71 0.826557
Target:  5'- cUGAAGGagGAGCUCGCCCgguucaucaugggggCGGggGGc -3'
miRNA:   3'- -AUUUUCgaCUCGAGCGGGa--------------GCCuuUC- -5'
5689 3' -51.9 NC_001806.1 + 78526 0.72 0.807587
Target:  5'- cAGAcGCUGAGC---CCCUCGGggGGg -3'
miRNA:   3'- aUUUuCGACUCGagcGGGAGCCuuUC- -5'
5689 3' -51.9 NC_001806.1 + 4399 0.75 0.623339
Target:  5'- -cGGGGCuUGGGCgCGgCCUCGGAGAGg -3'
miRNA:   3'- auUUUCG-ACUCGaGCgGGAGCCUUUC- -5'
5689 3' -51.9 NC_001806.1 + 62026 1.07 0.008249
Target:  5'- gUAAAAGCUGAGCUCGCCCUCGGAAAGc -3'
miRNA:   3'- -AUUUUCGACUCGAGCGGGAGCCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.