miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5689 5' -51.9 NC_001806.1 + 59042 0.66 0.984246
Target:  5'- cGUCCUCCACGggGG-AGGCggGGg-- -3'
miRNA:   3'- -CAGGGGGUGCuuUUgUUCGagCCaaa -5'
5689 5' -51.9 NC_001806.1 + 4922 0.66 0.984246
Target:  5'- cGUCCCCgGCGuccucGCcGGCgUCGGUg- -3'
miRNA:   3'- -CAGGGGgUGCuuu--UGuUCG-AGCCAaa -5'
5689 5' -51.9 NC_001806.1 + 142044 0.66 0.982263
Target:  5'- -gCCCUgACGAGcGACAGGCggcCGGUUc -3'
miRNA:   3'- caGGGGgUGCUU-UUGUUCGa--GCCAAa -5'
5689 5' -51.9 NC_001806.1 + 54688 0.66 0.982055
Target:  5'- cGUCCCCCAgGAAc-CAGGCaaacgucacgcccUCGGg-- -3'
miRNA:   3'- -CAGGGGGUgCUUuuGUUCG-------------AGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 7457 0.66 0.977743
Target:  5'- -cCCCCCGCGAAccACGuacGGCUCGcGg-- -3'
miRNA:   3'- caGGGGGUGCUUu-UGU---UCGAGC-Caaa -5'
5689 5' -51.9 NC_001806.1 + 135066 0.67 0.966246
Target:  5'- --gCCCCGCGggGACGcGC-CGGg-- -3'
miRNA:   3'- cagGGGGUGCuuUUGUuCGaGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 124306 0.67 0.966246
Target:  5'- uGUUCCCCGCGuacGACAuggacCUCGGUa- -3'
miRNA:   3'- -CAGGGGGUGCuu-UUGUuc---GAGCCAaa -5'
5689 5' -51.9 NC_001806.1 + 121386 0.68 0.95484
Target:  5'- -gUCCCCGCGAAGACccccccgGAGC-CGGg-- -3'
miRNA:   3'- caGGGGGUGCUUUUG-------UUCGaGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 83029 0.68 0.951092
Target:  5'- -cCCCCCGgGGuccuGGCGAGCgucgCGGUg- -3'
miRNA:   3'- caGGGGGUgCUu---UUGUUCGa---GCCAaa -5'
5689 5' -51.9 NC_001806.1 + 49429 0.68 0.951092
Target:  5'- gGUUCCCCGCGGuccuccGCAGGCcCGGc-- -3'
miRNA:   3'- -CAGGGGGUGCUuu----UGUUCGaGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 12279 0.68 0.934051
Target:  5'- gGUCCCCCAcaaagcgaagcucccCGAGAAUAAGCa-GGUc- -3'
miRNA:   3'- -CAGGGGGU---------------GCUUUUGUUCGagCCAaa -5'
5689 5' -51.9 NC_001806.1 + 119841 0.69 0.926523
Target:  5'- cGUCUCCUACGAGAACuccguGGCguggggCGGg-- -3'
miRNA:   3'- -CAGGGGGUGCUUUUGu----UCGa-----GCCaaa -5'
5689 5' -51.9 NC_001806.1 + 38069 0.69 0.926523
Target:  5'- cGUCCgCCGCGG--GCAGGCUgGGcUUUg -3'
miRNA:   3'- -CAGGgGGUGCUuuUGUUCGAgCC-AAA- -5'
5689 5' -51.9 NC_001806.1 + 118087 0.69 0.920835
Target:  5'- cUCCCCCGCaGAcuuggucaGAACGGGC-CGGUc- -3'
miRNA:   3'- cAGGGGGUG-CU--------UUUGUUCGaGCCAaa -5'
5689 5' -51.9 NC_001806.1 + 105767 0.69 0.920835
Target:  5'- gGUCCCCCAUGggGAauGGuUUUGGUUc -3'
miRNA:   3'- -CAGGGGGUGCuuUUguUC-GAGCCAAa -5'
5689 5' -51.9 NC_001806.1 + 92882 0.7 0.881339
Target:  5'- cGUCCCCCcaGCGu--GCAGGCUgCGGc-- -3'
miRNA:   3'- -CAGGGGG--UGCuuuUGUUCGA-GCCaaa -5'
5689 5' -51.9 NC_001806.1 + 75515 0.7 0.881339
Target:  5'- -gCCUcgcgggCCACGAGGGCAGGUUCGGg-- -3'
miRNA:   3'- caGGG------GGUGCUUUUGUUCGAGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 68082 0.7 0.866208
Target:  5'- uGUCCCCCACccacGCGAGC-CGGg-- -3'
miRNA:   3'- -CAGGGGGUGcuuuUGUUCGaGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 81773 0.71 0.833262
Target:  5'- aGUCCCgCCGCcAAAACGAGCgCGGg-- -3'
miRNA:   3'- -CAGGG-GGUGcUUUUGUUCGaGCCaaa -5'
5689 5' -51.9 NC_001806.1 + 3536 0.72 0.806444
Target:  5'- -cCCCCCGCGggGgagGCGGGCgcggCGGa-- -3'
miRNA:   3'- caGGGGGUGCuuU---UGUUCGa---GCCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.