miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 3' -55.9 NC_001806.1 + 24625 0.66 0.895604
Target:  5'- -cGCGCGCUgGGGccuGGGcGCGCcgCUg -3'
miRNA:   3'- uuUGUGCGAgUCCu--CCCuCGCGaaGA- -5'
5692 3' -55.9 NC_001806.1 + 29693 0.66 0.888798
Target:  5'- aGGGCGgGCcgGGGAGGGGGCGUa--- -3'
miRNA:   3'- -UUUGUgCGagUCCUCCCUCGCGaaga -5'
5692 3' -55.9 NC_001806.1 + 95097 0.66 0.888798
Target:  5'- -cGCGCGUUCGGGAGccaccuGGcGGCGCUg-- -3'
miRNA:   3'- uuUGUGCGAGUCCUC------CC-UCGCGAaga -5'
5692 3' -55.9 NC_001806.1 + 147837 0.66 0.888798
Target:  5'- gGGAgAgGC-CGGGGGGGAGuCGCUgaUCa -3'
miRNA:   3'- -UUUgUgCGaGUCCUCCCUC-GCGA--AGa -5'
5692 3' -55.9 NC_001806.1 + 25521 0.66 0.888105
Target:  5'- gGGACGCGC-CGGGgagggcuggggccGGGGAGgGCUg-- -3'
miRNA:   3'- -UUUGUGCGaGUCC-------------UCCCUCgCGAaga -5'
5692 3' -55.9 NC_001806.1 + 151184 0.66 0.881757
Target:  5'- uGACGCGCagGcGGAGGGcgaGGCGCggCg -3'
miRNA:   3'- uUUGUGCGagU-CCUCCC---UCGCGaaGa -5'
5692 3' -55.9 NC_001806.1 + 66010 0.66 0.881757
Target:  5'- -cACAuCGCgCAGGGGuGGGGCGCg--- -3'
miRNA:   3'- uuUGU-GCGaGUCCUC-CCUCGCGaaga -5'
5692 3' -55.9 NC_001806.1 + 34508 0.67 0.851348
Target:  5'- aGGACACgGCcCGGGGgguGGGAGCGCg--- -3'
miRNA:   3'- -UUUGUG-CGaGUCCU---CCCUCGCGaaga -5'
5692 3' -55.9 NC_001806.1 + 3278 0.67 0.851348
Target:  5'- -cACGCGCgCAGGcGGG-GCGCgUCg -3'
miRNA:   3'- uuUGUGCGaGUCCuCCCuCGCGaAGa -5'
5692 3' -55.9 NC_001806.1 + 131773 0.67 0.843213
Target:  5'- cAACGcCGCagGGGAGGGucgcgcGCGCUUUg -3'
miRNA:   3'- uUUGU-GCGagUCCUCCCu-----CGCGAAGa -5'
5692 3' -55.9 NC_001806.1 + 71359 0.67 0.817647
Target:  5'- --cCACGC-CAGGcggaccgcgAGGGGGCGCcUCa -3'
miRNA:   3'- uuuGUGCGaGUCC---------UCCCUCGCGaAGa -5'
5692 3' -55.9 NC_001806.1 + 76680 0.67 0.817647
Target:  5'- cAGGCGCGCUCGgcGGAGGaGAucGCGgaUCa -3'
miRNA:   3'- -UUUGUGCGAGU--CCUCC-CU--CGCgaAGa -5'
5692 3' -55.9 NC_001806.1 + 6185 0.68 0.799714
Target:  5'- gGAGCACGCggacCGGGAgcGGGAGuCGCa--- -3'
miRNA:   3'- -UUUGUGCGa---GUCCU--CCCUC-GCGaaga -5'
5692 3' -55.9 NC_001806.1 + 57152 0.68 0.781151
Target:  5'- --cCGCGCgagGGGAGGGGGUGCgcgCa -3'
miRNA:   3'- uuuGUGCGag-UCCUCCCUCGCGaa-Ga -5'
5692 3' -55.9 NC_001806.1 + 74728 0.68 0.781151
Target:  5'- -cGCGCGCUCccuGGAggcaaugcucgaGGGAGCGCg--- -3'
miRNA:   3'- uuUGUGCGAGu--CCU------------CCCUCGCGaaga -5'
5692 3' -55.9 NC_001806.1 + 95287 0.68 0.771657
Target:  5'- uGGCGCGCaUgGGGgcGGGGGGCGCggCg -3'
miRNA:   3'- uUUGUGCG-AgUCC--UCCCUCGCGaaGa -5'
5692 3' -55.9 NC_001806.1 + 30407 0.68 0.762034
Target:  5'- -cGCGCgGCUCGGGGGGGccgGGCGUg--- -3'
miRNA:   3'- uuUGUG-CGAGUCCUCCC---UCGCGaaga -5'
5692 3' -55.9 NC_001806.1 + 55284 0.68 0.762034
Target:  5'- aGAGCACGUggggguccgUUAGGuuGGGGGCGCUgUCg -3'
miRNA:   3'- -UUUGUGCG---------AGUCCu-CCCUCGCGA-AGa -5'
5692 3' -55.9 NC_001806.1 + 23272 0.68 0.762034
Target:  5'- --cCGCGCcgCGGGAGGG-GCGCa--- -3'
miRNA:   3'- uuuGUGCGa-GUCCUCCCuCGCGaaga -5'
5692 3' -55.9 NC_001806.1 + 94154 0.69 0.742439
Target:  5'- uGAACGCGCuUCAGGuGcGGGCGCUg-- -3'
miRNA:   3'- -UUUGUGCG-AGUCCuCcCUCGCGAaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.