Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5692 | 5' | -58.4 | NC_001806.1 | + | 67963 | 0.67 | 0.77945 |
Target: 5'- aAGAcGCGGGGuacucgcaACGCCuGCgG-GGGUCCu -3' miRNA: 3'- -UCUcUGUCCU--------UGCGG-CGgCaCCCAGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 18628 | 0.67 | 0.77945 |
Target: 5'- -cGGACuGGGACGCgaG-CGUGuGGUCCg -3' miRNA: 3'- ucUCUGuCCUUGCGg-CgGCAC-CCAGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 109486 | 0.67 | 0.788438 |
Target: 5'- uGGGGCGGGGAUGCCGUCaaacaGG-CCg -3' miRNA: 3'- uCUCUGUCCUUGCGGCGGcac--CCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 48747 | 0.67 | 0.788438 |
Target: 5'- aGGAGACGGGAccGCGCaaCCaacccacugGGGUCUg -3' miRNA: 3'- -UCUCUGUCCU--UGCGgcGGca-------CCCAGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 84070 | 0.67 | 0.797292 |
Target: 5'- gGGAGuCGGGGccccagcugcGCGCUGCCGcgGaGGcCCg -3' miRNA: 3'- -UCUCuGUCCU----------UGCGGCGGCa-C-CCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 76066 | 0.67 | 0.797292 |
Target: 5'- --uGGCGGGGGgGCUGCUGgagcGGGcCCa -3' miRNA: 3'- ucuCUGUCCUUgCGGCGGCa---CCCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 21290 | 0.67 | 0.797292 |
Target: 5'- cGGGACGGGAGgGCCcCCGcggcGGGcaCCg -3' miRNA: 3'- uCUCUGUCCUUgCGGcGGCa---CCCa-GG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 75977 | 0.66 | 0.806003 |
Target: 5'- --cGACuGGAGCGCgGCCuucgGGG-CCg -3' miRNA: 3'- ucuCUGuCCUUGCGgCGGca--CCCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 66833 | 0.66 | 0.806003 |
Target: 5'- gGGuGGCcGGuguGCGCCGCCuccugGGGcCCg -3' miRNA: 3'- -UCuCUGuCCu--UGCGGCGGca---CCCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 30029 | 0.66 | 0.806003 |
Target: 5'- cGGAGGCGGG---GCgGCCGaGGGgCCg -3' miRNA: 3'- -UCUCUGUCCuugCGgCGGCaCCCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 4436 | 0.66 | 0.806003 |
Target: 5'- -cGGGCGGGGGCGgCGuCCGcccgGGGgcugCCg -3' miRNA: 3'- ucUCUGUCCUUGCgGC-GGCa---CCCa---GG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 101200 | 0.66 | 0.806003 |
Target: 5'- cGGAGGCAGGGcCGCCcgcaCCGUauccGGaUCCa -3' miRNA: 3'- -UCUCUGUCCUuGCGGc---GGCA----CCcAGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 69719 | 0.66 | 0.806003 |
Target: 5'- uGAGACGGccGAGCGCCGCUuuaGUuccGGUCa -3' miRNA: 3'- uCUCUGUC--CUUGCGGCGG---CAc--CCAGg -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 1496 | 0.66 | 0.806003 |
Target: 5'- -----gGGGGGCGUCGUCGUcGGGcUCCa -3' miRNA: 3'- ucucugUCCUUGCGGCGGCA-CCC-AGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 142022 | 0.66 | 0.806003 |
Target: 5'- aGGGcGGCgAGGAGCGCCGCCGg----CCc -3' miRNA: 3'- -UCU-CUG-UCCUUGCGGCGGCacccaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 20864 | 0.66 | 0.822969 |
Target: 5'- cAGAGACAGaccgucaGACGCuCGCCGcgccGGGacgCCg -3' miRNA: 3'- -UCUCUGUCc------UUGCG-GCGGCa---CCCa--GG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 115071 | 0.66 | 0.822969 |
Target: 5'- cGuGGCGGGAAa-CCGCC-UGGGgCCg -3' miRNA: 3'- uCuCUGUCCUUgcGGCGGcACCCaGG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 75209 | 0.66 | 0.822969 |
Target: 5'- --cGACGGuGGAUGCgGCCGUGcGGgcgcaCCg -3' miRNA: 3'- ucuCUGUC-CUUGCGgCGGCAC-CCa----GG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 33123 | 0.66 | 0.822969 |
Target: 5'- cGGGGCccGGAcCGCCGCgGUcGGGggCCc -3' miRNA: 3'- uCUCUGu-CCUuGCGGCGgCA-CCCa-GG- -5' |
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5692 | 5' | -58.4 | NC_001806.1 | + | 31708 | 0.66 | 0.831207 |
Target: 5'- gGGAGugGGGGuGCGUgGgaGUGGGggugCCa -3' miRNA: 3'- -UCUCugUCCU-UGCGgCggCACCCa---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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