miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 95399 0.73 0.415653
Target:  5'- cGGGGGCGGGGGCgaggacgaagaccGUCGCCGcGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCUUG-------------CGGCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 11306 0.74 0.375206
Target:  5'- gGGAGGCguuGGGGugGgUGUCGUgGGGUCCa -3'
miRNA:   3'- -UCUCUG---UCCUugCgGCGGCA-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 27849 0.75 0.336766
Target:  5'- cGGGGACGGGGcCGCCccGCgGUGGG-CCu -3'
miRNA:   3'- -UCUCUGUCCUuGCGG--CGgCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 23945 0.75 0.329431
Target:  5'- cGGGGCcuGGGGGgGCCGCCGgaguGGUCCg -3'
miRNA:   3'- uCUCUG--UCCUUgCGGCGGCac--CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 56688 0.76 0.293867
Target:  5'- gGGGGACGGGGGCccgggaaccccggGUCGCUcUGGGUCCu -3'
miRNA:   3'- -UCUCUGUCCUUG-------------CGGCGGcACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 64809 0.71 0.532583
Target:  5'- gGGGGACGGGGuaggccgUGCCcguucccagacgugGCCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGUCCUu------GCGG--------------CGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 34000 0.71 0.535481
Target:  5'- cAGGGGCGGGGGCGUgGgCGgGGGUgCu -3'
miRNA:   3'- -UCUCUGUCCUUGCGgCgGCaCCCAgG- -5'
5692 5' -58.4 NC_001806.1 + 21757 0.7 0.624311
Target:  5'- cGAGGCGcGG---GCCGUCGggcgGGGUCCg -3'
miRNA:   3'- uCUCUGU-CCuugCGGCGGCa---CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 99689 0.7 0.614329
Target:  5'- uGGGGGCAuGGGACGCCGgaCCcUGGGgaggaCCg -3'
miRNA:   3'- -UCUCUGU-CCUUGCGGC--GGcACCCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 101489 0.7 0.60436
Target:  5'- cGGGACuGGAGC-CCGCCGUuuacgGGGUa- -3'
miRNA:   3'- uCUCUGuCCUUGcGGCGGCA-----CCCAgg -5'
5692 5' -58.4 NC_001806.1 + 23057 0.7 0.60436
Target:  5'- cGGcGGCAGcGAgGCCGCCGUGGccgCCg -3'
miRNA:   3'- -UCuCUGUCcUUgCGGCGGCACCca-GG- -5'
5692 5' -58.4 NC_001806.1 + 89894 0.7 0.59441
Target:  5'- ---cGCAGGGACcccgcguugccgGCCGCCG-GGGUUCa -3'
miRNA:   3'- ucucUGUCCUUG------------CGGCGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 59054 0.7 0.59441
Target:  5'- gGGAGGCGGGGGCcacaCCGCCaG-GGGaaUCCg -3'
miRNA:   3'- -UCUCUGUCCUUGc---GGCGG-CaCCC--AGG- -5'
5692 5' -58.4 NC_001806.1 + 30635 0.7 0.59441
Target:  5'- cAGGGcCGGGGggGCGCgGCCaggGUGGGcCCg -3'
miRNA:   3'- -UCUCuGUCCU--UGCGgCGG---CACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 2860 0.7 0.584487
Target:  5'- cGGGGAgGGGGGCGCgggcguccgaGCCGggGGcGUCCg -3'
miRNA:   3'- -UCUCUgUCCUUGCGg---------CGGCa-CC-CAGG- -5'
5692 5' -58.4 NC_001806.1 + 151598 0.71 0.564744
Target:  5'- uGGAGACAGaGAGCG-UGCCG-GGGUg- -3'
miRNA:   3'- -UCUCUGUC-CUUGCgGCGGCaCCCAgg -5'
5692 5' -58.4 NC_001806.1 + 51391 0.71 0.554937
Target:  5'- gAGGGGCuccuuAGCGCgGCCGUGGGcgCCu -3'
miRNA:   3'- -UCUCUGucc--UUGCGgCGGCACCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 17937 0.71 0.554937
Target:  5'- -cGGACGGGAGCGCgauuguaugCGCUGgUGcGGUCCc -3'
miRNA:   3'- ucUCUGUCCUUGCG---------GCGGC-AC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 16290 0.71 0.545181
Target:  5'- gAGGGGCAGGA---UCGCCGgGuGGUCCa -3'
miRNA:   3'- -UCUCUGUCCUugcGGCGGCaC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 98694 0.71 0.535481
Target:  5'- ------uGGGGCGCUgGCCGUGGGUCUg -3'
miRNA:   3'- ucucuguCCUUGCGG-CGGCACCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.